Strain Fitness in Pseudomonas sp. RS175 around PFR28_00537

Experiment: L-Valine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00536 and PFR28_00537 are separated by 0 nucleotidesPFR28_00537 and PFR28_00538 overlap by 4 nucleotides PFR28_00536: PFR28_00536 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 569,722 to 570,423 _00536 PFR28_00537: PFR28_00537 - Lipopolysaccharide export system ATP-binding protein LptB, at 570,424 to 571,191 _00537 PFR28_00538: PFR28_00538 - hypothetical protein, at 571,188 to 572,453 _00538 Position (kb) 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2 3at 569.447 kb on + strandat 569.447 kb on + strandat 569.447 kb on + strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.472 kb on - strandat 569.487 kb on + strandat 569.620 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.735 kb on + strandat 569.735 kb on + strandat 569.736 kb on - strandat 569.736 kb on - strandat 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 570.043 kb on - strand, within PFR28_00536at 570.245 kb on + strand, within PFR28_00536at 570.425 kb on + strandat 570.425 kb on + strandat 570.425 kb on + strandat 570.425 kb on + strandat 570.425 kb on + strandat 570.425 kb on + strandat 570.425 kb on + strandat 570.426 kb on - strandat 570.426 kb on - strandat 570.426 kb on - strandat 570.440 kb on + strandat 570.441 kb on - strandat 570.502 kb on - strand, within PFR28_00537at 570.726 kb on - strand, within PFR28_00537at 570.785 kb on + strand, within PFR28_00537at 570.794 kb on + strand, within PFR28_00537at 570.795 kb on - strand, within PFR28_00537at 570.925 kb on + strand, within PFR28_00537at 570.943 kb on + strand, within PFR28_00537at 571.209 kb on + strandat 571.209 kb on + strandat 571.210 kb on - strandat 571.210 kb on - strandat 571.210 kb on - strandat 571.232 kb on + strandat 571.232 kb on + strandat 571.232 kb on + strandat 571.232 kb on + strandat 571.660 kb on + strand, within PFR28_00538at 571.661 kb on - strand, within PFR28_00538at 571.661 kb on - strand, within PFR28_00538at 571.690 kb on + strand, within PFR28_00538at 571.691 kb on - strand, within PFR28_00538at 571.691 kb on - strand, within PFR28_00538at 571.691 kb on - strand, within PFR28_00538at 571.691 kb on - strand, within PFR28_00538at 571.976 kb on - strand, within PFR28_00538at 571.976 kb on - strand, within PFR28_00538at 571.976 kb on - strand, within PFR28_00538at 571.976 kb on - strand, within PFR28_00538at 571.993 kb on + strand, within PFR28_00538at 571.994 kb on - strand, within PFR28_00538at 571.999 kb on + strand, within PFR28_00538at 572.000 kb on - strand, within PFR28_00538at 572.026 kb on + strand, within PFR28_00538at 572.026 kb on + strand, within PFR28_00538at 572.027 kb on - strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.089 kb on + strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538at 572.090 kb on - strand, within PFR28_00538

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C) 10 mM
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569,447 + -0.7
569,447 + +1.0
569,447 + -0.1
569,448 - -0.8
569,448 - +0.2
569,448 - -0.4
569,448 - -0.0
569,448 - -0.2
569,448 - -0.7
569,472 - +0.1
569,487 + -1.8
569,620 + -0.6
569,641 + -0.1
569,641 + +0.9
569,641 + -0.1
569,641 + +0.0
569,641 + -0.1
569,641 + +0.1
569,641 + +1.5
569,641 + +0.9
569,641 + +0.6
569,641 + +0.0
569,641 + +1.3
569,641 + +0.7
569,641 + +0.2
569,641 + +0.6
569,642 - +0.6
569,642 - +0.7
569,642 - -1.3
569,642 - +2.3
569,642 - -0.6
569,642 - +0.2
569,642 - +0.1
569,642 - -0.5
569,642 - +1.5
569,642 - -0.0
569,642 - -0.7
569,642 - +0.1
569,642 - +0.0
569,642 - -0.2
569,642 - +0.0
569,642 - -0.9
569,642 - +0.5
569,642 - -0.8
569,642 - +0.4
569,642 - -0.2
569,642 - +0.5
569,735 + +1.6
569,735 + +1.2
569,736 - +1.8
569,736 - +2.0
569,813 + PFR28_00536 0.13 +2.2
569,813 + PFR28_00536 0.13 +2.3
569,813 + PFR28_00536 0.13 +1.6
569,813 + PFR28_00536 0.13 +1.1
569,813 + PFR28_00536 0.13 +1.4
569,813 + PFR28_00536 0.13 +1.8
569,814 - PFR28_00536 0.13 +2.7
569,814 - PFR28_00536 0.13 +2.0
569,814 - PFR28_00536 0.13 +1.6
569,814 - PFR28_00536 0.13 +0.5
569,814 - PFR28_00536 0.13 +2.5
569,814 - PFR28_00536 0.13 +1.6
569,814 - PFR28_00536 0.13 +2.2
569,814 - PFR28_00536 0.13 +1.8
569,814 - PFR28_00536 0.13 +1.5
569,814 - PFR28_00536 0.13 +1.7
569,814 - PFR28_00536 0.13 +1.9
569,814 - PFR28_00536 0.13 +1.8
569,814 - PFR28_00536 0.13 +1.0
570,043 - PFR28_00536 0.46 +1.5
570,245 + PFR28_00536 0.75 +2.8
570,425 + +2.5
570,425 + +0.8
570,425 + +1.4
570,425 + +1.2
570,425 + +1.4
570,425 + +1.4
570,425 + +2.3
570,426 - +0.8
570,426 - +0.9
570,426 - +0.2
570,440 + +1.2
570,441 - +2.5
570,502 - PFR28_00537 0.10 +1.8
570,726 - PFR28_00537 0.39 +1.7
570,785 + PFR28_00537 0.47 +1.4
570,794 + PFR28_00537 0.48 -1.1
570,795 - PFR28_00537 0.48 +2.2
570,925 + PFR28_00537 0.65 +2.3
570,943 + PFR28_00537 0.68 +2.2
571,209 + +2.2
571,209 + +1.4
571,210 - +0.6
571,210 - +0.6
571,210 - +0.7
571,232 + +2.1
571,232 + +2.3
571,232 + +1.8
571,232 + +1.4
571,660 + PFR28_00538 0.37 +2.1
571,661 - PFR28_00538 0.37 +2.5
571,661 - PFR28_00538 0.37 +0.6
571,690 + PFR28_00538 0.40 +1.9
571,691 - PFR28_00538 0.40 +2.0
571,691 - PFR28_00538 0.40 +1.6
571,691 - PFR28_00538 0.40 +1.4
571,691 - PFR28_00538 0.40 +1.6
571,976 - PFR28_00538 0.62 +2.2
571,976 - PFR28_00538 0.62 +1.3
571,976 - PFR28_00538 0.62 +1.2
571,976 - PFR28_00538 0.62 +2.0
571,993 + PFR28_00538 0.64 +1.4
571,994 - PFR28_00538 0.64 +0.0
571,999 + PFR28_00538 0.64 -0.1
572,000 - PFR28_00538 0.64 +1.9
572,026 + PFR28_00538 0.66 +2.1
572,026 + PFR28_00538 0.66 +1.7
572,027 - PFR28_00538 0.66 +1.0
572,089 + PFR28_00538 0.71 +2.8
572,089 + PFR28_00538 0.71 +1.3
572,089 + PFR28_00538 0.71 +1.7
572,089 + PFR28_00538 0.71 +1.6
572,089 + PFR28_00538 0.71 +1.5
572,089 + PFR28_00538 0.71 +0.6
572,089 + PFR28_00538 0.71 +0.6
572,089 + PFR28_00538 0.71 +1.8
572,089 + PFR28_00538 0.71 +1.9
572,089 + PFR28_00538 0.71 +1.7
572,090 - PFR28_00538 0.71 +0.6
572,090 - PFR28_00538 0.71 +1.7
572,090 - PFR28_00538 0.71 +1.5
572,090 - PFR28_00538 0.71 +1.1
572,090 - PFR28_00538 0.71 +1.2
572,090 - PFR28_00538 0.71 +2.4
572,090 - PFR28_00538 0.71 +1.3
572,090 - PFR28_00538 0.71 +1.5
572,090 - PFR28_00538 0.71 +1.4
572,090 - PFR28_00538 0.71 +1.2
572,090 - PFR28_00538 0.71 +0.8
572,090 - PFR28_00538 0.71 +1.9
572,090 - PFR28_00538 0.71 +1.2
572,090 - PFR28_00538 0.71 +2.2
572,090 - PFR28_00538 0.71 +1.7
572,090 - PFR28_00538 0.71 +1.8
572,090 - PFR28_00538 0.71 +0.7
572,090 - PFR28_00538 0.71 +1.5

Or see this region's nucleotide sequence