Strain Fitness in Pseudomonas sp. RS175 around PFR28_00050

Experiment: L-Valine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00049 and PFR28_00050 are separated by 16 nucleotidesPFR28_00050 and PFR28_00051 are separated by 9 nucleotides PFR28_00049: PFR28_00049 - Oligopeptide transport ATP-binding protein OppD, at 59,116 to 60,132 _00049 PFR28_00050: PFR28_00050 - Dipeptide transport system permease protein DppC, at 60,149 to 61,051 _00050 PFR28_00051: PFR28_00051 - Glutathione transport system permease protein GsiC, at 61,061 to 61,978 _00051 Position (kb) 60 61 62Strain fitness (log2 ratio) -1 0 1 2at 59.373 kb on - strand, within PFR28_00049at 59.373 kb on - strand, within PFR28_00049at 59.435 kb on + strand, within PFR28_00049at 59.435 kb on + strand, within PFR28_00049at 59.435 kb on + strand, within PFR28_00049at 59.435 kb on + strand, within PFR28_00049at 59.435 kb on + strand, within PFR28_00049at 59.436 kb on - strand, within PFR28_00049at 59.801 kb on + strand, within PFR28_00049at 59.801 kb on + strand, within PFR28_00049at 59.802 kb on - strand, within PFR28_00049at 59.983 kb on - strand, within PFR28_00049at 60.006 kb on + strand, within PFR28_00049at 60.147 kb on - strandat 60.270 kb on + strand, within PFR28_00050at 60.270 kb on + strand, within PFR28_00050at 60.270 kb on + strand, within PFR28_00050at 60.270 kb on + strand, within PFR28_00050at 60.270 kb on + strand, within PFR28_00050at 60.270 kb on + strand, within PFR28_00050at 60.270 kb on + strand, within PFR28_00050at 60.270 kb on + strand, within PFR28_00050at 60.270 kb on + strand, within PFR28_00050at 60.270 kb on + strand, within PFR28_00050at 60.271 kb on - strand, within PFR28_00050at 60.271 kb on - strand, within PFR28_00050at 60.271 kb on - strand, within PFR28_00050at 60.271 kb on - strand, within PFR28_00050at 60.271 kb on - strand, within PFR28_00050at 60.271 kb on - strand, within PFR28_00050at 60.477 kb on + strand, within PFR28_00050at 60.477 kb on + strand, within PFR28_00050at 60.477 kb on + strand, within PFR28_00050at 60.477 kb on + strand, within PFR28_00050at 60.477 kb on + strand, within PFR28_00050at 60.478 kb on - strand, within PFR28_00050at 60.478 kb on - strand, within PFR28_00050at 60.675 kb on + strand, within PFR28_00050at 60.678 kb on + strand, within PFR28_00050at 60.679 kb on - strand, within PFR28_00050at 60.766 kb on - strand, within PFR28_00050at 60.783 kb on + strand, within PFR28_00050at 60.783 kb on + strand, within PFR28_00050at 60.784 kb on - strand, within PFR28_00050at 60.784 kb on - strand, within PFR28_00050at 60.817 kb on - strand, within PFR28_00050at 60.879 kb on + strand, within PFR28_00050at 61.017 kb on + strandat 61.017 kb on + strandat 61.017 kb on + strandat 61.018 kb on - strandat 61.053 kb on + strandat 61.053 kb on + strandat 61.053 kb on + strandat 61.053 kb on + strandat 61.053 kb on + strandat 61.053 kb on + strandat 61.053 kb on + strandat 61.054 kb on - strandat 61.054 kb on - strandat 61.054 kb on - strandat 61.054 kb on - strandat 61.128 kb on + strandat 61.128 kb on + strandat 61.128 kb on + strandat 61.128 kb on + strandat 61.128 kb on + strandat 61.128 kb on + strandat 61.129 kb on - strandat 61.129 kb on - strandat 61.129 kb on - strandat 61.129 kb on - strandat 61.129 kb on - strandat 61.129 kb on - strandat 61.129 kb on - strandat 61.152 kb on - strandat 61.161 kb on - strand, within PFR28_00051at 61.372 kb on - strand, within PFR28_00051at 61.434 kb on + strand, within PFR28_00051at 61.435 kb on - strand, within PFR28_00051at 61.438 kb on - strand, within PFR28_00051at 61.438 kb on - strand, within PFR28_00051at 61.438 kb on - strand, within PFR28_00051at 61.720 kb on - strand, within PFR28_00051at 61.720 kb on - strand, within PFR28_00051at 61.819 kb on - strand, within PFR28_00051at 61.819 kb on - strand, within PFR28_00051

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C) 10 mM
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59,373 - PFR28_00049 0.25 -0.7
59,373 - PFR28_00049 0.25 -0.7
59,435 + PFR28_00049 0.31 +0.5
59,435 + PFR28_00049 0.31 +0.1
59,435 + PFR28_00049 0.31 -0.3
59,435 + PFR28_00049 0.31 -0.2
59,435 + PFR28_00049 0.31 +0.4
59,436 - PFR28_00049 0.31 +0.5
59,801 + PFR28_00049 0.67 +0.8
59,801 + PFR28_00049 0.67 -0.3
59,802 - PFR28_00049 0.67 +0.8
59,983 - PFR28_00049 0.85 -0.5
60,006 + PFR28_00049 0.88 -0.1
60,147 - -0.0
60,270 + PFR28_00050 0.13 -1.1
60,270 + PFR28_00050 0.13 +0.1
60,270 + PFR28_00050 0.13 -0.8
60,270 + PFR28_00050 0.13 -0.4
60,270 + PFR28_00050 0.13 -0.2
60,270 + PFR28_00050 0.13 +0.4
60,270 + PFR28_00050 0.13 +0.6
60,270 + PFR28_00050 0.13 -0.2
60,270 + PFR28_00050 0.13 -0.3
60,270 + PFR28_00050 0.13 -1.1
60,271 - PFR28_00050 0.14 +1.8
60,271 - PFR28_00050 0.14 +0.1
60,271 - PFR28_00050 0.14 +0.1
60,271 - PFR28_00050 0.14 -0.1
60,271 - PFR28_00050 0.14 -1.1
60,271 - PFR28_00050 0.14 -0.1
60,477 + PFR28_00050 0.36 -0.7
60,477 + PFR28_00050 0.36 -0.3
60,477 + PFR28_00050 0.36 -0.4
60,477 + PFR28_00050 0.36 -1.1
60,477 + PFR28_00050 0.36 +0.0
60,478 - PFR28_00050 0.36 +0.4
60,478 - PFR28_00050 0.36 -0.1
60,675 + PFR28_00050 0.58 +0.8
60,678 + PFR28_00050 0.59 -0.3
60,679 - PFR28_00050 0.59 -0.8
60,766 - PFR28_00050 0.68 +2.3
60,783 + PFR28_00050 0.70 -0.3
60,783 + PFR28_00050 0.70 +0.9
60,784 - PFR28_00050 0.70 -0.1
60,784 - PFR28_00050 0.70 +0.1
60,817 - PFR28_00050 0.74 +1.8
60,879 + PFR28_00050 0.81 +0.5
61,017 + -0.9
61,017 + -0.5
61,017 + -0.4
61,018 - +1.0
61,053 + +0.4
61,053 + -0.6
61,053 + +0.3
61,053 + -0.5
61,053 + +0.3
61,053 + -0.7
61,053 + -0.2
61,054 - +0.3
61,054 - +0.6
61,054 - +0.7
61,054 - +0.3
61,128 + +0.2
61,128 + -1.6
61,128 + +1.5
61,128 + -0.2
61,128 + +0.3
61,128 + -0.6
61,129 - -0.0
61,129 - +0.4
61,129 - -0.7
61,129 - +0.3
61,129 - +0.0
61,129 - +0.9
61,129 - +0.2
61,152 - +0.0
61,161 - PFR28_00051 0.11 +1.0
61,372 - PFR28_00051 0.34 -1.2
61,434 + PFR28_00051 0.41 -0.5
61,435 - PFR28_00051 0.41 -0.1
61,438 - PFR28_00051 0.41 +0.1
61,438 - PFR28_00051 0.41 -0.3
61,438 - PFR28_00051 0.41 +0.3
61,720 - PFR28_00051 0.72 +0.8
61,720 - PFR28_00051 0.72 -0.1
61,819 - PFR28_00051 0.83 +0.1
61,819 - PFR28_00051 0.83 +1.7

Or see this region's nucleotide sequence