Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2634

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2633 and Echvi_2634 are separated by 76 nucleotidesEchvi_2634 and Echvi_2635 overlap by 26 nucleotides Echvi_2633: Echvi_2633 - gamma-glutamylphosphate reductase (EC 1.2.1.41) (from data), at 3,120,871 to 3,122,070 _2633 Echvi_2634: Echvi_2634 - glutamate 5-kinase, at 3,122,147 to 3,122,953 _2634 Echvi_2635: Echvi_2635 - pyrroline-5-carboxylate reductase, at 3,122,928 to 3,123,743 _2635 Position (kb) 3122 3123Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3121.168 kb on - strand, within Echvi_2633at 3121.235 kb on - strand, within Echvi_2633at 3121.271 kb on - strand, within Echvi_2633at 3121.276 kb on - strand, within Echvi_2633at 3121.277 kb on + strand, within Echvi_2633at 3121.278 kb on - strand, within Echvi_2633at 3121.363 kb on - strand, within Echvi_2633at 3121.440 kb on - strand, within Echvi_2633at 3121.533 kb on + strand, within Echvi_2633at 3121.617 kb on + strand, within Echvi_2633at 3121.618 kb on - strand, within Echvi_2633at 3121.676 kb on - strand, within Echvi_2633at 3121.707 kb on + strand, within Echvi_2633at 3121.708 kb on - strand, within Echvi_2633at 3121.766 kb on + strand, within Echvi_2633at 3121.767 kb on - strand, within Echvi_2633at 3121.777 kb on - strand, within Echvi_2633at 3121.852 kb on + strand, within Echvi_2633at 3121.903 kb on + strand, within Echvi_2633at 3121.903 kb on + strand, within Echvi_2633at 3121.903 kb on + strand, within Echvi_2633at 3121.904 kb on - strand, within Echvi_2633at 3121.935 kb on - strand, within Echvi_2633at 3122.063 kb on - strandat 3122.063 kb on - strandat 3122.116 kb on + strandat 3122.116 kb on + strandat 3122.117 kb on - strandat 3122.148 kb on + strandat 3122.227 kb on + strandat 3122.228 kb on - strand, within Echvi_2634at 3122.265 kb on - strand, within Echvi_2634at 3122.275 kb on + strand, within Echvi_2634at 3122.276 kb on - strand, within Echvi_2634at 3122.293 kb on + strand, within Echvi_2634at 3122.293 kb on + strand, within Echvi_2634at 3122.398 kb on + strand, within Echvi_2634at 3122.399 kb on - strand, within Echvi_2634at 3122.400 kb on + strand, within Echvi_2634at 3122.400 kb on + strand, within Echvi_2634at 3122.643 kb on + strand, within Echvi_2634at 3122.643 kb on + strand, within Echvi_2634at 3122.643 kb on + strand, within Echvi_2634at 3122.656 kb on + strand, within Echvi_2634at 3122.656 kb on + strand, within Echvi_2634at 3122.657 kb on - strand, within Echvi_2634at 3122.661 kb on + strand, within Echvi_2634at 3122.664 kb on + strand, within Echvi_2634at 3122.722 kb on + strand, within Echvi_2634at 3122.860 kb on + strand, within Echvi_2634at 3122.900 kb on + strandat 3122.900 kb on + strandat 3122.926 kb on + strandat 3122.929 kb on + strandat 3122.969 kb on + strandat 3122.981 kb on - strandat 3123.209 kb on - strand, within Echvi_2635at 3123.209 kb on - strand, within Echvi_2635at 3123.215 kb on + strand, within Echvi_2635at 3123.215 kb on + strand, within Echvi_2635at 3123.215 kb on + strand, within Echvi_2635at 3123.216 kb on - strand, within Echvi_2635at 3123.216 kb on - strand, within Echvi_2635at 3123.216 kb on - strand, within Echvi_2635at 3123.217 kb on + strand, within Echvi_2635at 3123.217 kb on + strand, within Echvi_2635at 3123.217 kb on + strand, within Echvi_2635at 3123.218 kb on - strand, within Echvi_2635at 3123.218 kb on - strand, within Echvi_2635at 3123.257 kb on + strand, within Echvi_2635at 3123.257 kb on + strand, within Echvi_2635at 3123.293 kb on + strand, within Echvi_2635at 3123.297 kb on - strand, within Echvi_2635at 3123.353 kb on + strand, within Echvi_2635at 3123.354 kb on - strand, within Echvi_2635at 3123.376 kb on - strand, within Echvi_2635at 3123.422 kb on + strand, within Echvi_2635at 3123.422 kb on + strand, within Echvi_2635at 3123.423 kb on - strand, within Echvi_2635at 3123.423 kb on - strand, within Echvi_2635at 3123.423 kb on - strand, within Echvi_2635at 3123.437 kb on + strand, within Echvi_2635at 3123.437 kb on + strand, within Echvi_2635at 3123.438 kb on - strand, within Echvi_2635at 3123.444 kb on + strand, within Echvi_2635at 3123.444 kb on + strand, within Echvi_2635at 3123.445 kb on - strand, within Echvi_2635at 3123.529 kb on + strand, within Echvi_2635at 3123.654 kb on - strand, within Echvi_2635at 3123.654 kb on - strand, within Echvi_2635at 3123.730 kb on - strandat 3123.780 kb on + strandat 3123.797 kb on + strandat 3123.867 kb on + strandat 3123.874 kb on + strandat 3123.899 kb on - strandat 3123.939 kb on - strandat 3123.940 kb on + strandat 3123.940 kb on + strandat 3123.940 kb on + strandat 3123.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,121,168 - Echvi_2633 0.25 -2.7
3,121,235 - Echvi_2633 0.30 -3.0
3,121,271 - Echvi_2633 0.33 -0.8
3,121,276 - Echvi_2633 0.34 -0.4
3,121,277 + Echvi_2633 0.34 -4.5
3,121,278 - Echvi_2633 0.34 -1.9
3,121,363 - Echvi_2633 0.41 -3.0
3,121,440 - Echvi_2633 0.47 -4.0
3,121,533 + Echvi_2633 0.55 -1.8
3,121,617 + Echvi_2633 0.62 -2.4
3,121,618 - Echvi_2633 0.62 -1.6
3,121,676 - Echvi_2633 0.67 -3.0
3,121,707 + Echvi_2633 0.70 -2.4
3,121,708 - Echvi_2633 0.70 -1.8
3,121,766 + Echvi_2633 0.75 -2.8
3,121,767 - Echvi_2633 0.75 -0.0
3,121,777 - Echvi_2633 0.76 -2.6
3,121,852 + Echvi_2633 0.82 -2.6
3,121,903 + Echvi_2633 0.86 -1.2
3,121,903 + Echvi_2633 0.86 -2.4
3,121,903 + Echvi_2633 0.86 -2.4
3,121,904 - Echvi_2633 0.86 -1.7
3,121,935 - Echvi_2633 0.89 -1.4
3,122,063 - +1.6
3,122,063 - -0.8
3,122,116 + +0.9
3,122,116 + +0.1
3,122,117 - -1.6
3,122,148 + -0.0
3,122,227 + -1.6
3,122,228 - Echvi_2634 0.10 +0.2
3,122,265 - Echvi_2634 0.15 +0.0
3,122,275 + Echvi_2634 0.16 -1.8
3,122,276 - Echvi_2634 0.16 +0.8
3,122,293 + Echvi_2634 0.18 -2.4
3,122,293 + Echvi_2634 0.18 -1.7
3,122,398 + Echvi_2634 0.31 -1.0
3,122,399 - Echvi_2634 0.31 -0.4
3,122,400 + Echvi_2634 0.31 -1.0
3,122,400 + Echvi_2634 0.31 -2.0
3,122,643 + Echvi_2634 0.61 -1.1
3,122,643 + Echvi_2634 0.61 -2.3
3,122,643 + Echvi_2634 0.61 +0.6
3,122,656 + Echvi_2634 0.63 -1.2
3,122,656 + Echvi_2634 0.63 -0.2
3,122,657 - Echvi_2634 0.63 +0.6
3,122,661 + Echvi_2634 0.64 -0.7
3,122,664 + Echvi_2634 0.64 -1.3
3,122,722 + Echvi_2634 0.71 -0.2
3,122,860 + Echvi_2634 0.88 -2.1
3,122,900 + +0.3
3,122,900 + +0.5
3,122,926 + -1.9
3,122,929 + -0.8
3,122,969 + +0.6
3,122,981 - -0.2
3,123,209 - Echvi_2635 0.34 +0.2
3,123,209 - Echvi_2635 0.34 -0.3
3,123,215 + Echvi_2635 0.35 -1.3
3,123,215 + Echvi_2635 0.35 -1.2
3,123,215 + Echvi_2635 0.35 -0.0
3,123,216 - Echvi_2635 0.35 -0.4
3,123,216 - Echvi_2635 0.35 +1.3
3,123,216 - Echvi_2635 0.35 -0.8
3,123,217 + Echvi_2635 0.35 -2.8
3,123,217 + Echvi_2635 0.35 -2.0
3,123,217 + Echvi_2635 0.35 -1.0
3,123,218 - Echvi_2635 0.36 -0.2
3,123,218 - Echvi_2635 0.36 +0.1
3,123,257 + Echvi_2635 0.40 -0.8
3,123,257 + Echvi_2635 0.40 -2.3
3,123,293 + Echvi_2635 0.45 -1.2
3,123,297 - Echvi_2635 0.45 -0.3
3,123,353 + Echvi_2635 0.52 -1.1
3,123,354 - Echvi_2635 0.52 +0.7
3,123,376 - Echvi_2635 0.55 +0.6
3,123,422 + Echvi_2635 0.61 -1.4
3,123,422 + Echvi_2635 0.61 -1.6
3,123,423 - Echvi_2635 0.61 +0.7
3,123,423 - Echvi_2635 0.61 -0.7
3,123,423 - Echvi_2635 0.61 +1.0
3,123,437 + Echvi_2635 0.62 +0.1
3,123,437 + Echvi_2635 0.62 -0.0
3,123,438 - Echvi_2635 0.62 +1.6
3,123,444 + Echvi_2635 0.63 +0.4
3,123,444 + Echvi_2635 0.63 -1.7
3,123,445 - Echvi_2635 0.63 +0.3
3,123,529 + Echvi_2635 0.74 -0.9
3,123,654 - Echvi_2635 0.89 -0.4
3,123,654 - Echvi_2635 0.89 +0.2
3,123,730 - -0.0
3,123,780 + -1.3
3,123,797 + -0.7
3,123,867 + +0.5
3,123,874 + +0.1
3,123,899 - -1.0
3,123,939 - -0.2
3,123,940 + -0.9
3,123,940 + -0.4
3,123,940 + -0.4
3,123,944 + +0.2

Or see this region's nucleotide sequence