Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0437 and Echvi_0438 are separated by 33 nucleotides Echvi_0438 and Echvi_0439 overlap by 61 nucleotides Echvi_0439 and Echvi_0440 are separated by 212 nucleotides Echvi_0440 and Echvi_0441 are separated by 785 nucleotides
Echvi_0437: Echvi_0437 - DNA primase (bacterial type), at 477,193 to 478,056
_0437
Echvi_0438: Echvi_0438 - hypothetical protein, at 478,090 to 478,263
_0438
Echvi_0439: Echvi_0439 - hypothetical protein, at 478,203 to 478,484
_0439
Echvi_0440: Echvi_0440 - DNA repair proteins, at 478,697 to 479,167
_0440
Echvi_0441: Echvi_0441 - Predicted ATP-dependent endonuclease of the OLD family, at 479,953 to 481,680
_0441
Position (kb) 478
479
480 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 477.727 kb on - strand, within Echvi_0437 at 477.727 kb on - strand, within Echvi_0437 at 477.806 kb on + strand, within Echvi_0437 at 477.806 kb on + strand, within Echvi_0437 at 477.876 kb on - strand, within Echvi_0437 at 477.901 kb on + strand, within Echvi_0437 at 477.901 kb on + strand, within Echvi_0437 at 478.059 kb on + strand at 478.060 kb on - strand at 478.095 kb on + strand at 478.096 kb on - strand at 478.099 kb on - strand at 478.132 kb on - strand, within Echvi_0438 at 478.163 kb on + strand, within Echvi_0438 at 478.164 kb on - strand, within Echvi_0438 at 478.172 kb on + strand, within Echvi_0438 at 478.172 kb on + strand, within Echvi_0438 at 478.523 kb on + strand at 478.523 kb on + strand at 478.573 kb on + strand at 478.648 kb on + strand at 478.648 kb on + strand at 478.720 kb on - strand at 478.751 kb on - strand, within Echvi_0440 at 478.784 kb on + strand, within Echvi_0440 at 478.784 kb on + strand, within Echvi_0440 at 479.447 kb on - strand at 479.475 kb on + strand at 479.475 kb on + strand at 479.475 kb on + strand at 479.509 kb on + strand at 479.509 kb on + strand at 479.515 kb on + strand at 479.515 kb on + strand at 479.575 kb on + strand at 479.576 kb on - strand at 479.587 kb on + strand at 479.588 kb on - strand at 479.599 kb on - strand at 479.622 kb on + strand at 479.624 kb on + strand at 479.625 kb on - strand at 479.647 kb on - strand at 479.655 kb on + strand at 479.691 kb on + strand at 479.703 kb on + strand at 479.719 kb on + strand at 479.735 kb on - strand at 479.735 kb on - strand at 479.736 kb on + strand at 479.736 kb on + strand at 479.737 kb on - strand at 479.742 kb on + strand at 479.743 kb on - strand at 479.816 kb on + strand at 479.817 kb on - strand at 479.936 kb on + strand at 479.936 kb on + strand at 479.937 kb on - strand at 479.937 kb on - strand at 479.937 kb on - strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.939 kb on - strand at 479.939 kb on - strand at 479.939 kb on - strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.027 kb on - strand at 480.030 kb on - strand at 480.035 kb on + strand at 480.035 kb on + strand at 480.042 kb on + strand at 480.045 kb on + strand at 480.046 kb on - strand at 480.046 kb on - strand at 480.046 kb on - strand at 480.049 kb on - strand at 480.065 kb on + strand at 480.065 kb on + strand at 480.089 kb on + strand at 480.099 kb on + strand at 480.100 kb on - strand at 480.100 kb on - strand at 480.140 kb on - strand, within Echvi_0441 at 480.150 kb on - strand, within Echvi_0441 at 480.151 kb on + strand, within Echvi_0441 at 480.156 kb on + strand, within Echvi_0441 at 480.157 kb on - strand, within Echvi_0441
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 477,727 - Echvi_0437 0.62 -0.4 477,727 - Echvi_0437 0.62 -1.6 477,806 + Echvi_0437 0.71 -0.4 477,806 + Echvi_0437 0.71 -1.3 477,876 - Echvi_0437 0.79 -0.5 477,901 + Echvi_0437 0.82 -0.0 477,901 + Echvi_0437 0.82 +1.2 478,059 + -0.2 478,060 - -0.4 478,095 + +0.0 478,096 - +1.9 478,099 - +1.0 478,132 - Echvi_0438 0.24 +1.6 478,163 + Echvi_0438 0.42 -0.6 478,164 - Echvi_0438 0.43 -0.1 478,172 + Echvi_0438 0.47 +0.7 478,172 + Echvi_0438 0.47 -0.5 478,523 + +1.6 478,523 + +0.3 478,573 + +0.9 478,648 + -0.2 478,648 + -0.5 478,720 - +0.2 478,751 - Echvi_0440 0.11 -0.5 478,784 + Echvi_0440 0.18 -0.6 478,784 + Echvi_0440 0.18 -0.6 479,447 - -1.3 479,475 + -0.5 479,475 + -1.8 479,475 + -0.1 479,509 + -1.7 479,509 + -0.1 479,515 + -0.2 479,515 + +0.3 479,575 + +0.3 479,576 - -0.4 479,587 + -0.3 479,588 - -0.3 479,599 - -0.2 479,622 + -1.4 479,624 + -0.6 479,625 - -0.4 479,647 - -0.9 479,655 + -1.4 479,691 + -0.3 479,703 + +0.2 479,719 + +0.9 479,735 - +1.0 479,735 - -0.0 479,736 + +3.3 479,736 + -0.3 479,737 - +0.6 479,742 + -1.0 479,743 - -0.1 479,816 + -1.6 479,817 - -0.3 479,936 + +0.6 479,936 + +0.1 479,937 - +1.0 479,937 - -0.8 479,937 - -0.6 479,938 + -0.9 479,938 + -1.3 479,938 + -1.2 479,938 + +0.1 479,938 + -1.0 479,939 - +0.1 479,939 - -0.7 479,939 - +0.0 480,026 + +0.4 480,026 + -2.0 480,026 + -0.1 480,026 + +1.4 480,026 + -1.1 480,027 - -0.0 480,030 - +0.6 480,035 + -0.1 480,035 + -0.5 480,042 + -0.2 480,045 + -0.7 480,046 - -0.1 480,046 - +0.5 480,046 - +0.1 480,049 - -0.2 480,065 + +0.4 480,065 + +0.5 480,089 + +0.0 480,099 + -0.3 480,100 - +0.4 480,100 - -0.6 480,140 - Echvi_0441 0.11 +0.0 480,150 - Echvi_0441 0.11 +0.4 480,151 + Echvi_0441 0.11 -0.1 480,156 + Echvi_0441 0.12 +0.0 480,157 - Echvi_0441 0.12 -1.1
Or see this region's nucleotide sequence