Strain Fitness in Escherichia coli BL21 around ECD_04309

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01261 and ECD_04309 are separated by 89 nucleotidesECD_04309 and ECD_01262 are separated by 146 nucleotides ECD_01261: ECD_01261 - global regulator of transcription; DeoR family, at 1,329,966 to 1,330,715 _01261 ECD_04309: ECD_04309 - uncharacterized protein, at 1,330,805 to 1,330,978 _04309 ECD_01262: ECD_01262 - cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability, at 1,331,125 to 1,333,110 _01262 Position (kb) 1330 1331Strain fitness (log2 ratio) -1 0 1 2at 1330.082 kb on - strand, within ECD_01261at 1330.167 kb on - strand, within ECD_01261at 1330.281 kb on - strand, within ECD_01261at 1330.358 kb on - strand, within ECD_01261at 1330.377 kb on - strand, within ECD_01261at 1330.580 kb on - strand, within ECD_01261at 1330.620 kb on - strand, within ECD_01261at 1330.841 kb on - strand, within ECD_04309at 1330.925 kb on - strand, within ECD_04309at 1331.783 kb on - strand, within ECD_01262at 1331.783 kb on - strand, within ECD_01262at 1331.786 kb on - strand, within ECD_01262at 1331.835 kb on - strand, within ECD_01262

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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1,330,082 - ECD_01261 0.15 -1.1
1,330,167 - ECD_01261 0.27 +0.5
1,330,281 - ECD_01261 0.42 -0.3
1,330,358 - ECD_01261 0.52 +2.1
1,330,377 - ECD_01261 0.55 -0.1
1,330,580 - ECD_01261 0.82 -0.7
1,330,620 - ECD_01261 0.87 -1.7
1,330,841 - ECD_04309 0.21 -1.1
1,330,925 - ECD_04309 0.69 -0.8
1,331,783 - ECD_01262 0.33 +0.8
1,331,783 - ECD_01262 0.33 +0.5
1,331,786 - ECD_01262 0.33 -0.2
1,331,835 - ECD_01262 0.36 -0.4

Or see this region's nucleotide sequence