Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04106 and ECD_04107 are separated by 393 nucleotides ECD_04107 and ECD_04108 are separated by 49 nucleotides
ECD_04106: ECD_04106 - anaerobic ribonucleoside-triphosphate reductase, at 4,372,164 to 4,374,302
_04106
ECD_04107: ECD_04107 - trehalose-6-P hydrolase, at 4,374,696 to 4,376,351
_04107
ECD_04108: ECD_04108 - trehalose-specific PTS enzyme: IIB and IIC component, at 4,376,401 to 4,377,822
_04108
Position (kb)
4374
4375
4376
4377 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4373.738 kb on + strand, within ECD_04106 at 4373.739 kb on - strand, within ECD_04106 at 4373.885 kb on - strand, within ECD_04106 at 4374.062 kb on - strand, within ECD_04106 at 4374.083 kb on - strand, within ECD_04106 at 4374.083 kb on - strand, within ECD_04106 at 4374.218 kb on + strand at 4374.442 kb on + strand at 4374.442 kb on + strand at 4374.452 kb on + strand at 4374.453 kb on - strand at 4374.453 kb on - strand at 4374.453 kb on - strand at 4374.505 kb on + strand at 4374.506 kb on - strand at 4374.697 kb on + strand at 4374.774 kb on - strand at 4374.894 kb on + strand, within ECD_04107 at 4374.895 kb on - strand, within ECD_04107 at 4375.018 kb on - strand, within ECD_04107 at 4375.224 kb on - strand, within ECD_04107 at 4375.275 kb on - strand, within ECD_04107 at 4375.877 kb on - strand, within ECD_04107 at 4376.142 kb on - strand, within ECD_04107 at 4376.144 kb on - strand, within ECD_04107 at 4376.144 kb on - strand, within ECD_04107 at 4376.144 kb on - strand, within ECD_04107 at 4376.184 kb on - strand, within ECD_04107 at 4376.184 kb on - strand, within ECD_04107 at 4376.441 kb on + strand at 4376.442 kb on - strand at 4376.446 kb on - strand at 4376.500 kb on + strand at 4376.510 kb on + strand at 4376.549 kb on - strand, within ECD_04108 at 4376.587 kb on + strand, within ECD_04108 at 4376.587 kb on + strand, within ECD_04108 at 4376.587 kb on + strand, within ECD_04108 at 4376.588 kb on - strand, within ECD_04108 at 4376.588 kb on - strand, within ECD_04108 at 4376.590 kb on + strand, within ECD_04108 at 4376.591 kb on - strand, within ECD_04108 at 4376.657 kb on + strand, within ECD_04108 at 4376.658 kb on - strand, within ECD_04108 at 4376.746 kb on - strand, within ECD_04108 at 4376.753 kb on - strand, within ECD_04108 at 4376.944 kb on + strand, within ECD_04108 at 4377.050 kb on + strand, within ECD_04108 at 4377.057 kb on - strand, within ECD_04108 at 4377.206 kb on + strand, within ECD_04108 at 4377.314 kb on + strand, within ECD_04108 at 4377.315 kb on - strand, within ECD_04108
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 4,373,738 + ECD_04106 0.74 -1.9 4,373,739 - ECD_04106 0.74 +1.6 4,373,885 - ECD_04106 0.80 +0.6 4,374,062 - ECD_04106 0.89 -0.6 4,374,083 - ECD_04106 0.90 +0.1 4,374,083 - ECD_04106 0.90 -2.8 4,374,218 + -1.5 4,374,442 + -0.4 4,374,442 + -0.8 4,374,452 + -3.5 4,374,453 - +0.7 4,374,453 - +0.6 4,374,453 - +0.9 4,374,505 + +0.3 4,374,506 - +1.9 4,374,697 + +0.0 4,374,774 - -1.8 4,374,894 + ECD_04107 0.12 +0.7 4,374,895 - ECD_04107 0.12 -0.6 4,375,018 - ECD_04107 0.19 -0.3 4,375,224 - ECD_04107 0.32 -0.7 4,375,275 - ECD_04107 0.35 -1.1 4,375,877 - ECD_04107 0.71 -1.3 4,376,142 - ECD_04107 0.87 -1.3 4,376,144 - ECD_04107 0.87 -1.3 4,376,144 - ECD_04107 0.87 -1.2 4,376,144 - ECD_04107 0.87 +0.0 4,376,184 - ECD_04107 0.90 -1.7 4,376,184 - ECD_04107 0.90 -1.3 4,376,441 + -1.6 4,376,442 - -0.9 4,376,446 - -1.9 4,376,500 + -0.5 4,376,510 + +0.6 4,376,549 - ECD_04108 0.10 -2.3 4,376,587 + ECD_04108 0.13 -1.8 4,376,587 + ECD_04108 0.13 -1.3 4,376,587 + ECD_04108 0.13 +2.4 4,376,588 - ECD_04108 0.13 +1.2 4,376,588 - ECD_04108 0.13 +0.7 4,376,590 + ECD_04108 0.13 -1.6 4,376,591 - ECD_04108 0.13 -4.2 4,376,657 + ECD_04108 0.18 +0.9 4,376,658 - ECD_04108 0.18 -0.4 4,376,746 - ECD_04108 0.24 -2.2 4,376,753 - ECD_04108 0.25 +1.2 4,376,944 + ECD_04108 0.38 -0.1 4,377,050 + ECD_04108 0.46 +1.5 4,377,057 - ECD_04108 0.46 -1.5 4,377,206 + ECD_04108 0.57 +0.9 4,377,314 + ECD_04108 0.64 +0.3 4,377,315 - ECD_04108 0.64 -1.3
Or see this region's nucleotide sequence