Strain Fitness in Escherichia coli BL21 around ECD_04107

Experiment: P2_phage_0.5625_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04106 and ECD_04107 are separated by 393 nucleotidesECD_04107 and ECD_04108 are separated by 49 nucleotides ECD_04106: ECD_04106 - anaerobic ribonucleoside-triphosphate reductase, at 4,372,164 to 4,374,302 _04106 ECD_04107: ECD_04107 - trehalose-6-P hydrolase, at 4,374,696 to 4,376,351 _04107 ECD_04108: ECD_04108 - trehalose-specific PTS enzyme: IIB and IIC component, at 4,376,401 to 4,377,822 _04108 Position (kb) 4374 4375 4376 4377Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4373.738 kb on + strand, within ECD_04106at 4373.739 kb on - strand, within ECD_04106at 4373.885 kb on - strand, within ECD_04106at 4374.062 kb on - strand, within ECD_04106at 4374.083 kb on - strand, within ECD_04106at 4374.083 kb on - strand, within ECD_04106at 4374.218 kb on + strandat 4374.442 kb on + strandat 4374.442 kb on + strandat 4374.452 kb on + strandat 4374.453 kb on - strandat 4374.453 kb on - strandat 4374.453 kb on - strandat 4374.505 kb on + strandat 4374.506 kb on - strandat 4374.697 kb on + strandat 4374.774 kb on - strandat 4374.894 kb on + strand, within ECD_04107at 4374.895 kb on - strand, within ECD_04107at 4375.018 kb on - strand, within ECD_04107at 4375.224 kb on - strand, within ECD_04107at 4375.275 kb on - strand, within ECD_04107at 4375.877 kb on - strand, within ECD_04107at 4376.142 kb on - strand, within ECD_04107at 4376.144 kb on - strand, within ECD_04107at 4376.144 kb on - strand, within ECD_04107at 4376.144 kb on - strand, within ECD_04107at 4376.184 kb on - strand, within ECD_04107at 4376.184 kb on - strand, within ECD_04107at 4376.441 kb on + strandat 4376.442 kb on - strandat 4376.446 kb on - strandat 4376.500 kb on + strandat 4376.510 kb on + strandat 4376.549 kb on - strand, within ECD_04108at 4376.587 kb on + strand, within ECD_04108at 4376.587 kb on + strand, within ECD_04108at 4376.587 kb on + strand, within ECD_04108at 4376.588 kb on - strand, within ECD_04108at 4376.588 kb on - strand, within ECD_04108at 4376.590 kb on + strand, within ECD_04108at 4376.591 kb on - strand, within ECD_04108at 4376.657 kb on + strand, within ECD_04108at 4376.658 kb on - strand, within ECD_04108at 4376.746 kb on - strand, within ECD_04108at 4376.753 kb on - strand, within ECD_04108at 4376.944 kb on + strand, within ECD_04108at 4377.050 kb on + strand, within ECD_04108at 4377.057 kb on - strand, within ECD_04108at 4377.206 kb on + strand, within ECD_04108at 4377.314 kb on + strand, within ECD_04108at 4377.315 kb on - strand, within ECD_04108

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
remove
4,373,738 + ECD_04106 0.74 -1.9
4,373,739 - ECD_04106 0.74 +1.6
4,373,885 - ECD_04106 0.80 +0.6
4,374,062 - ECD_04106 0.89 -0.6
4,374,083 - ECD_04106 0.90 +0.1
4,374,083 - ECD_04106 0.90 -2.8
4,374,218 + -1.5
4,374,442 + -0.4
4,374,442 + -0.8
4,374,452 + -3.5
4,374,453 - +0.7
4,374,453 - +0.6
4,374,453 - +0.9
4,374,505 + +0.3
4,374,506 - +1.9
4,374,697 + +0.0
4,374,774 - -1.8
4,374,894 + ECD_04107 0.12 +0.7
4,374,895 - ECD_04107 0.12 -0.6
4,375,018 - ECD_04107 0.19 -0.3
4,375,224 - ECD_04107 0.32 -0.7
4,375,275 - ECD_04107 0.35 -1.1
4,375,877 - ECD_04107 0.71 -1.3
4,376,142 - ECD_04107 0.87 -1.3
4,376,144 - ECD_04107 0.87 -1.3
4,376,144 - ECD_04107 0.87 -1.2
4,376,144 - ECD_04107 0.87 +0.0
4,376,184 - ECD_04107 0.90 -1.7
4,376,184 - ECD_04107 0.90 -1.3
4,376,441 + -1.6
4,376,442 - -0.9
4,376,446 - -1.9
4,376,500 + -0.5
4,376,510 + +0.6
4,376,549 - ECD_04108 0.10 -2.3
4,376,587 + ECD_04108 0.13 -1.8
4,376,587 + ECD_04108 0.13 -1.3
4,376,587 + ECD_04108 0.13 +2.4
4,376,588 - ECD_04108 0.13 +1.2
4,376,588 - ECD_04108 0.13 +0.7
4,376,590 + ECD_04108 0.13 -1.6
4,376,591 - ECD_04108 0.13 -4.2
4,376,657 + ECD_04108 0.18 +0.9
4,376,658 - ECD_04108 0.18 -0.4
4,376,746 - ECD_04108 0.24 -2.2
4,376,753 - ECD_04108 0.25 +1.2
4,376,944 + ECD_04108 0.38 -0.1
4,377,050 + ECD_04108 0.46 +1.5
4,377,057 - ECD_04108 0.46 -1.5
4,377,206 + ECD_04108 0.57 +0.9
4,377,314 + ECD_04108 0.64 +0.3
4,377,315 - ECD_04108 0.64 -1.3

Or see this region's nucleotide sequence