Strain Fitness in Escherichia coli BL21 around ECD_03998

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03997 and ECD_03998 are separated by 11 nucleotidesECD_03998 and ECD_03999 are separated by 226 nucleotidesECD_03999 and ECD_04000 are separated by 319 nucleotides ECD_03997: ECD_03997 - putative 4Fe-4S mono-cluster protein, at 4,258,928 to 4,259,158 _03997 ECD_03998: ECD_03998 - GNAT family putative N-acetyltransferase, at 4,259,170 to 4,259,442 _03998 ECD_03999: ECD_03999 - antitoxin of GhoTS toxin-antitoxin pair; endonuclease for ghoT mRNA, at 4,259,669 to 4,259,965 _03999 ECD_04000: ECD_04000 - lysine tRNA synthetase, inducible, at 4,260,285 to 4,261,802 _04000 Position (kb) 4259 4260Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4258.185 kb on - strandat 4258.199 kb on - strandat 4258.199 kb on - strandat 4258.241 kb on + strandat 4258.242 kb on - strandat 4258.290 kb on + strandat 4258.290 kb on + strandat 4258.291 kb on - strandat 4258.291 kb on - strandat 4258.291 kb on - strandat 4258.387 kb on + strandat 4258.457 kb on - strandat 4258.610 kb on - strandat 4258.610 kb on - strandat 4258.629 kb on + strandat 4258.718 kb on + strandat 4258.773 kb on + strandat 4258.781 kb on - strandat 4258.799 kb on - strandat 4258.828 kb on + strandat 4258.828 kb on + strandat 4258.831 kb on - strandat 4258.869 kb on + strandat 4258.892 kb on + strandat 4258.892 kb on + strandat 4258.892 kb on + strandat 4258.965 kb on - strand, within ECD_03997at 4258.966 kb on + strand, within ECD_03997at 4259.028 kb on + strand, within ECD_03997at 4259.120 kb on - strand, within ECD_03997at 4259.157 kb on - strandat 4259.206 kb on - strand, within ECD_03998at 4259.280 kb on + strand, within ECD_03998at 4259.762 kb on + strand, within ECD_03999at 4260.173 kb on + strandat 4260.173 kb on + strandat 4260.329 kb on + strandat 4260.333 kb on - strandat 4260.342 kb on - strandat 4260.354 kb on - strandat 4260.421 kb on + strandat 4260.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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4,258,185 - +0.1
4,258,199 - -0.2
4,258,199 - +1.2
4,258,241 + +0.2
4,258,242 - +2.2
4,258,290 + +0.2
4,258,290 + -2.2
4,258,291 - -0.5
4,258,291 - +0.9
4,258,291 - +1.3
4,258,387 + -0.7
4,258,457 - +0.1
4,258,610 - -0.7
4,258,610 - +1.8
4,258,629 + +2.3
4,258,718 + -0.5
4,258,773 + +0.7
4,258,781 - -3.3
4,258,799 - -2.0
4,258,828 + -1.7
4,258,828 + -1.3
4,258,831 - +0.4
4,258,869 + -0.5
4,258,892 + +0.8
4,258,892 + +2.0
4,258,892 + +0.5
4,258,965 - ECD_03997 0.16 -1.8
4,258,966 + ECD_03997 0.16 +0.0
4,259,028 + ECD_03997 0.43 +3.1
4,259,120 - ECD_03997 0.83 +0.7
4,259,157 - +1.1
4,259,206 - ECD_03998 0.13 -1.4
4,259,280 + ECD_03998 0.40 -1.9
4,259,762 + ECD_03999 0.31 +0.9
4,260,173 + +1.7
4,260,173 + -1.9
4,260,329 + -0.1
4,260,333 - +0.6
4,260,342 - +1.7
4,260,354 - +0.5
4,260,421 + -3.0
4,260,422 - -0.7

Or see this region's nucleotide sequence