Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03997 and ECD_03998 are separated by 11 nucleotides ECD_03998 and ECD_03999 are separated by 226 nucleotides ECD_03999 and ECD_04000 are separated by 319 nucleotides
ECD_03997: ECD_03997 - putative 4Fe-4S mono-cluster protein, at 4,258,928 to 4,259,158
_03997
ECD_03998: ECD_03998 - GNAT family putative N-acetyltransferase, at 4,259,170 to 4,259,442
_03998
ECD_03999: ECD_03999 - antitoxin of GhoTS toxin-antitoxin pair; endonuclease for ghoT mRNA, at 4,259,669 to 4,259,965
_03999
ECD_04000: ECD_04000 - lysine tRNA synthetase, inducible, at 4,260,285 to 4,261,802
_04000
Position (kb)
4259
4260 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4258.185 kb on - strand at 4258.199 kb on - strand at 4258.199 kb on - strand at 4258.241 kb on + strand at 4258.242 kb on - strand at 4258.290 kb on + strand at 4258.290 kb on + strand at 4258.291 kb on - strand at 4258.291 kb on - strand at 4258.291 kb on - strand at 4258.387 kb on + strand at 4258.457 kb on - strand at 4258.610 kb on - strand at 4258.610 kb on - strand at 4258.629 kb on + strand at 4258.718 kb on + strand at 4258.773 kb on + strand at 4258.781 kb on - strand at 4258.799 kb on - strand at 4258.828 kb on + strand at 4258.828 kb on + strand at 4258.831 kb on - strand at 4258.869 kb on + strand at 4258.892 kb on + strand at 4258.892 kb on + strand at 4258.892 kb on + strand at 4258.965 kb on - strand, within ECD_03997 at 4258.966 kb on + strand, within ECD_03997 at 4259.028 kb on + strand, within ECD_03997 at 4259.120 kb on - strand, within ECD_03997 at 4259.157 kb on - strand at 4259.206 kb on - strand, within ECD_03998 at 4259.280 kb on + strand, within ECD_03998 at 4259.762 kb on + strand, within ECD_03999 at 4260.173 kb on + strand at 4260.173 kb on + strand at 4260.329 kb on + strand at 4260.333 kb on - strand at 4260.342 kb on - strand at 4260.354 kb on - strand at 4260.421 kb on + strand at 4260.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 4,258,185 - +0.1 4,258,199 - -0.2 4,258,199 - +1.2 4,258,241 + +0.2 4,258,242 - +2.2 4,258,290 + +0.2 4,258,290 + -2.2 4,258,291 - -0.5 4,258,291 - +0.9 4,258,291 - +1.3 4,258,387 + -0.7 4,258,457 - +0.1 4,258,610 - -0.7 4,258,610 - +1.8 4,258,629 + +2.3 4,258,718 + -0.5 4,258,773 + +0.7 4,258,781 - -3.3 4,258,799 - -2.0 4,258,828 + -1.7 4,258,828 + -1.3 4,258,831 - +0.4 4,258,869 + -0.5 4,258,892 + +0.8 4,258,892 + +2.0 4,258,892 + +0.5 4,258,965 - ECD_03997 0.16 -1.8 4,258,966 + ECD_03997 0.16 +0.0 4,259,028 + ECD_03997 0.43 +3.1 4,259,120 - ECD_03997 0.83 +0.7 4,259,157 - +1.1 4,259,206 - ECD_03998 0.13 -1.4 4,259,280 + ECD_03998 0.40 -1.9 4,259,762 + ECD_03999 0.31 +0.9 4,260,173 + +1.7 4,260,173 + -1.9 4,260,329 + -0.1 4,260,333 - +0.6 4,260,342 - +1.7 4,260,354 - +0.5 4,260,421 + -3.0 4,260,422 - -0.7
Or see this region's nucleotide sequence