Strain Fitness in Escherichia coli BL21 around ECD_03963

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03961 and ECD_03962 are separated by 358 nucleotidesECD_03962 and ECD_03963 are separated by 68 nucleotidesECD_03963 and ECD_03964 are separated by 146 nucleotidesECD_03964 and ECD_03965 are separated by 1 nucleotides ECD_03961: ECD_03961 - d-allose-inducible als operon transcriptional repressor; autorepressor; repressor of rpiR, at 4,219,288 to 4,220,178 _03961 ECD_03962: ECD_03962 - ribose 5-phosphate isomerase B/allose 6-phosphate isomerase, at 4,220,537 to 4,220,986 _03962 ECD_03963: ECD_03963 - putative periplasmic protein, at 4,221,055 to 4,221,384 _03963 ECD_03964: ECD_03964 - 5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase, at 4,221,531 to 4,222,289 _03964 ECD_03965: ECD_03965 - aminoalkylphosphonate N-acetyltransferase, at 4,222,291 to 4,222,725 _03965 Position (kb) 4221 4222Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4220.124 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.140 kb on - strandat 4220.212 kb on + strandat 4220.213 kb on - strandat 4220.213 kb on - strandat 4220.214 kb on + strandat 4220.215 kb on - strandat 4220.374 kb on + strandat 4220.452 kb on + strandat 4220.453 kb on - strandat 4220.592 kb on + strand, within ECD_03962at 4220.807 kb on + strand, within ECD_03962at 4220.808 kb on - strand, within ECD_03962at 4220.834 kb on - strand, within ECD_03962at 4220.921 kb on + strand, within ECD_03962at 4220.921 kb on + strand, within ECD_03962at 4220.968 kb on - strandat 4220.998 kb on + strandat 4220.999 kb on - strandat 4221.022 kb on - strandat 4221.022 kb on - strandat 4221.031 kb on - strandat 4221.162 kb on + strand, within ECD_03963at 4221.173 kb on - strand, within ECD_03963at 4221.173 kb on - strand, within ECD_03963at 4221.173 kb on - strand, within ECD_03963at 4221.173 kb on - strand, within ECD_03963at 4221.257 kb on - strand, within ECD_03963at 4221.374 kb on - strandat 4221.374 kb on - strandat 4221.624 kb on - strand, within ECD_03964at 4222.055 kb on + strand, within ECD_03964at 4222.056 kb on - strand, within ECD_03964at 4222.056 kb on - strand, within ECD_03964at 4222.056 kb on - strand, within ECD_03964at 4222.152 kb on - strand, within ECD_03964at 4222.162 kb on - strand, within ECD_03964at 4222.293 kb on - strandat 4222.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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4,220,124 - -1.1
4,220,138 - -0.7
4,220,138 - +0.5
4,220,138 - +0.4
4,220,138 - -0.1
4,220,138 - +0.4
4,220,140 - -0.2
4,220,212 + -3.8
4,220,213 - +0.4
4,220,213 - -0.3
4,220,214 + -2.2
4,220,215 - +0.2
4,220,374 + +0.2
4,220,452 + +1.1
4,220,453 - -2.0
4,220,592 + ECD_03962 0.12 -2.1
4,220,807 + ECD_03962 0.60 +2.5
4,220,808 - ECD_03962 0.60 -2.9
4,220,834 - ECD_03962 0.66 +1.6
4,220,921 + ECD_03962 0.85 +1.9
4,220,921 + ECD_03962 0.85 +1.1
4,220,968 - -2.9
4,220,998 + +1.0
4,220,999 - -2.5
4,221,022 - -2.2
4,221,022 - +0.6
4,221,031 - -0.8
4,221,162 + ECD_03963 0.32 +1.9
4,221,173 - ECD_03963 0.36 -1.9
4,221,173 - ECD_03963 0.36 -1.1
4,221,173 - ECD_03963 0.36 -1.6
4,221,173 - ECD_03963 0.36 -1.7
4,221,257 - ECD_03963 0.61 -0.1
4,221,374 - -2.4
4,221,374 - -1.1
4,221,624 - ECD_03964 0.12 +1.1
4,222,055 + ECD_03964 0.69 +1.1
4,222,056 - ECD_03964 0.69 -0.5
4,222,056 - ECD_03964 0.69 -3.0
4,222,056 - ECD_03964 0.69 +1.5
4,222,152 - ECD_03964 0.82 -3.1
4,222,162 - ECD_03964 0.83 +0.4
4,222,293 - +0.9
4,222,293 - -1.7

Or see this region's nucleotide sequence