Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03918 and ECD_03919 are separated by 318 nucleotides ECD_03919 and ECD_03920 overlap by 10 nucleotides ECD_03920 and ECD_03921 are separated by 362 nucleotides
ECD_03918: ECD_03918 - transcriptional repressor, Zn(II)-binding, at 4,166,860 to 4,167,375
_03918
ECD_03919: ECD_03919 - uncharacterized protein, at 4,167,694 to 4,167,978
_03919
ECD_03920: ECD_03920 - uncharacterized protein, at 4,167,969 to 4,168,715
_03920
ECD_03921: ECD_03921 - tRNA-dihydrouridine synthase A, at 4,169,078 to 4,170,115
_03921
Position (kb) 4167
4168
4169 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4166.974 kb on - strand, within ECD_03918 at 4167.010 kb on - strand, within ECD_03918 at 4167.010 kb on - strand, within ECD_03918 at 4167.010 kb on - strand, within ECD_03918 at 4167.072 kb on + strand, within ECD_03918 at 4167.073 kb on - strand, within ECD_03918 at 4167.078 kb on + strand, within ECD_03918 at 4167.078 kb on + strand, within ECD_03918 at 4167.078 kb on + strand, within ECD_03918 at 4167.079 kb on - strand, within ECD_03918 at 4167.079 kb on - strand, within ECD_03918 at 4167.079 kb on - strand, within ECD_03918 at 4167.087 kb on + strand, within ECD_03918 at 4167.088 kb on - strand, within ECD_03918 at 4167.123 kb on - strand, within ECD_03918 at 4167.242 kb on + strand, within ECD_03918 at 4167.347 kb on - strand at 4167.347 kb on - strand at 4167.409 kb on + strand at 4167.506 kb on - strand at 4167.602 kb on + strand at 4167.635 kb on + strand at 4167.636 kb on - strand at 4167.654 kb on + strand at 4167.656 kb on + strand at 4168.130 kb on + strand, within ECD_03920 at 4168.420 kb on - strand, within ECD_03920 at 4168.845 kb on + strand at 4168.989 kb on + strand at 4168.989 kb on + strand at 4168.989 kb on + strand at 4168.991 kb on + strand at 4168.991 kb on + strand at 4169.230 kb on + strand, within ECD_03921 at 4169.231 kb on - strand, within ECD_03921 at 4169.240 kb on + strand, within ECD_03921 at 4169.240 kb on + strand, within ECD_03921 at 4169.241 kb on - strand, within ECD_03921 at 4169.241 kb on - strand, within ECD_03921 at 4169.241 kb on - strand, within ECD_03921 at 4169.241 kb on - strand, within ECD_03921 at 4169.243 kb on - strand, within ECD_03921 at 4169.297 kb on + strand, within ECD_03921 at 4169.297 kb on + strand, within ECD_03921 at 4169.298 kb on - strand, within ECD_03921 at 4169.568 kb on - strand, within ECD_03921 at 4169.642 kb on - strand, within ECD_03921 at 4169.642 kb on - strand, within ECD_03921 at 4169.642 kb on - strand, within ECD_03921 at 4169.711 kb on + strand, within ECD_03921 at 4169.711 kb on + strand, within ECD_03921
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 4,166,974 - ECD_03918 0.22 -0.2 4,167,010 - ECD_03918 0.29 +1.0 4,167,010 - ECD_03918 0.29 +0.9 4,167,010 - ECD_03918 0.29 +2.0 4,167,072 + ECD_03918 0.41 +2.0 4,167,073 - ECD_03918 0.41 +1.1 4,167,078 + ECD_03918 0.42 -2.5 4,167,078 + ECD_03918 0.42 +0.5 4,167,078 + ECD_03918 0.42 -2.3 4,167,079 - ECD_03918 0.42 +0.9 4,167,079 - ECD_03918 0.42 +2.0 4,167,079 - ECD_03918 0.42 -0.4 4,167,087 + ECD_03918 0.44 +1.4 4,167,088 - ECD_03918 0.44 +0.1 4,167,123 - ECD_03918 0.51 +1.1 4,167,242 + ECD_03918 0.74 -0.2 4,167,347 - -2.3 4,167,347 - +3.5 4,167,409 + -1.5 4,167,506 - -1.8 4,167,602 + +2.2 4,167,635 + -0.2 4,167,636 - +2.6 4,167,654 + -1.7 4,167,656 + -0.9 4,168,130 + ECD_03920 0.22 -0.1 4,168,420 - ECD_03920 0.60 -0.3 4,168,845 + +0.3 4,168,989 + -0.1 4,168,989 + -0.4 4,168,989 + -0.7 4,168,991 + +1.3 4,168,991 + +1.7 4,169,230 + ECD_03921 0.15 -0.9 4,169,231 - ECD_03921 0.15 +2.8 4,169,240 + ECD_03921 0.16 +1.2 4,169,240 + ECD_03921 0.16 +0.2 4,169,241 - ECD_03921 0.16 -0.5 4,169,241 - ECD_03921 0.16 -0.5 4,169,241 - ECD_03921 0.16 -1.7 4,169,241 - ECD_03921 0.16 +0.8 4,169,243 - ECD_03921 0.16 +0.9 4,169,297 + ECD_03921 0.21 -1.5 4,169,297 + ECD_03921 0.21 -1.0 4,169,298 - ECD_03921 0.21 -1.1 4,169,568 - ECD_03921 0.47 +0.4 4,169,642 - ECD_03921 0.54 +1.3 4,169,642 - ECD_03921 0.54 -3.8 4,169,642 - ECD_03921 0.54 -1.6 4,169,711 + ECD_03921 0.61 -0.3 4,169,711 + ECD_03921 0.61 -0.7
Or see this region's nucleotide sequence