Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00022 and ECD_03884 are separated by 292 nucleotides ECD_03884 and ECD_03885 are separated by 156 nucleotides ECD_03885 and ECD_03886 are separated by 268 nucleotides
ECD_r00022: ECD_r00022 - 5S ribosomal RNA, at 4,121,153 to 4,121,272
_r00022
ECD_03884: ECD_03884 - GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein, at 4,121,565 to 4,122,008
_03884
ECD_03885: ECD_03885 - homoserine O-transsuccinylase, at 4,122,165 to 4,123,094
_03885
ECD_03886: ECD_03886 - malate synthase A, at 4,123,363 to 4,124,964
_03886
Position (kb) 4122
4123
4124 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4121.579 kb on - strand at 4121.643 kb on - strand, within ECD_03884 at 4121.659 kb on + strand, within ECD_03884 at 4121.660 kb on - strand, within ECD_03884 at 4121.660 kb on - strand, within ECD_03884 at 4121.748 kb on + strand, within ECD_03884 at 4121.777 kb on + strand, within ECD_03884 at 4121.793 kb on - strand, within ECD_03884 at 4121.883 kb on + strand, within ECD_03884 at 4121.884 kb on - strand, within ECD_03884 at 4121.905 kb on + strand, within ECD_03884 at 4122.000 kb on - strand at 4122.022 kb on - strand at 4122.117 kb on + strand at 4122.144 kb on - strand at 4122.148 kb on - strand at 4122.272 kb on + strand, within ECD_03885 at 4122.434 kb on + strand, within ECD_03885 at 4122.446 kb on + strand, within ECD_03885 at 4122.677 kb on + strand, within ECD_03885 at 4122.677 kb on + strand, within ECD_03885 at 4122.778 kb on - strand, within ECD_03885 at 4122.823 kb on - strand, within ECD_03885 at 4122.823 kb on - strand, within ECD_03885 at 4122.837 kb on - strand, within ECD_03885 at 4122.877 kb on - strand, within ECD_03885 at 4122.946 kb on - strand, within ECD_03885 at 4122.946 kb on - strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.977 kb on + strand, within ECD_03885 at 4123.035 kb on + strand at 4123.039 kb on - strand at 4123.059 kb on + strand at 4123.092 kb on + strand at 4123.133 kb on + strand at 4123.134 kb on - strand at 4123.411 kb on + strand at 4123.412 kb on - strand at 4123.623 kb on - strand, within ECD_03886 at 4123.643 kb on + strand, within ECD_03886 at 4123.803 kb on + strand, within ECD_03886 at 4123.804 kb on - strand, within ECD_03886 at 4123.991 kb on - strand, within ECD_03886 at 4123.997 kb on - strand, within ECD_03886 at 4124.053 kb on + strand, within ECD_03886 at 4124.054 kb on - strand, within ECD_03886 at 4124.054 kb on - strand, within ECD_03886
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 4,121,579 - -1.7 4,121,643 - ECD_03884 0.18 -2.5 4,121,659 + ECD_03884 0.21 -3.1 4,121,660 - ECD_03884 0.21 +1.9 4,121,660 - ECD_03884 0.21 +0.1 4,121,748 + ECD_03884 0.41 -1.4 4,121,777 + ECD_03884 0.48 -2.6 4,121,793 - ECD_03884 0.51 -0.9 4,121,883 + ECD_03884 0.72 -4.0 4,121,884 - ECD_03884 0.72 -1.8 4,121,905 + ECD_03884 0.77 -0.8 4,122,000 - +0.7 4,122,022 - +0.9 4,122,117 + +0.8 4,122,144 - +0.4 4,122,148 - -3.0 4,122,272 + ECD_03885 0.12 -0.5 4,122,434 + ECD_03885 0.29 -0.7 4,122,446 + ECD_03885 0.30 -1.3 4,122,677 + ECD_03885 0.55 -2.1 4,122,677 + ECD_03885 0.55 -1.8 4,122,778 - ECD_03885 0.66 +0.6 4,122,823 - ECD_03885 0.71 -0.1 4,122,823 - ECD_03885 0.71 -1.4 4,122,837 - ECD_03885 0.72 -1.6 4,122,877 - ECD_03885 0.77 -1.7 4,122,946 - ECD_03885 0.84 -3.4 4,122,946 - ECD_03885 0.84 -0.0 4,122,951 + ECD_03885 0.85 -0.9 4,122,951 + ECD_03885 0.85 -1.9 4,122,951 + ECD_03885 0.85 -0.2 4,122,951 + ECD_03885 0.85 -2.1 4,122,977 + ECD_03885 0.87 -3.6 4,123,035 + -1.0 4,123,039 - -1.9 4,123,059 + -0.2 4,123,092 + +1.7 4,123,133 + -1.9 4,123,134 - +2.0 4,123,411 + -0.5 4,123,412 - -2.6 4,123,623 - ECD_03886 0.16 +0.7 4,123,643 + ECD_03886 0.17 +0.2 4,123,803 + ECD_03886 0.27 -0.3 4,123,804 - ECD_03886 0.28 +0.5 4,123,991 - ECD_03886 0.39 +2.6 4,123,997 - ECD_03886 0.40 -0.1 4,124,053 + ECD_03886 0.43 +2.9 4,124,054 - ECD_03886 0.43 -0.5 4,124,054 - ECD_03886 0.43 -3.2
Or see this region's nucleotide sequence