Strain Fitness in Escherichia coli BL21 around ECD_03846

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03845 and ECD_03846 are separated by 266 nucleotidesECD_03846 and ECD_03847 overlap by 18 nucleotides ECD_03845: ECD_03845 - argininosuccinate lyase, at 4,065,151 to 4,066,524 _03845 ECD_03846: ECD_03846 - oxidative and nitrosative stress transcriptional regulator, at 4,066,791 to 4,067,708 _03846 ECD_03847: ECD_03847 - pyridine nucleotide transhydrogenase, soluble, at 4,067,691 to 4,069,091 _03847 Position (kb) 4066 4067 4068Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4065.820 kb on - strand, within ECD_03845at 4066.099 kb on + strand, within ECD_03845at 4066.099 kb on + strand, within ECD_03845at 4066.110 kb on + strand, within ECD_03845at 4066.110 kb on + strand, within ECD_03845at 4066.110 kb on + strand, within ECD_03845at 4066.111 kb on - strand, within ECD_03845at 4066.149 kb on + strand, within ECD_03845at 4066.308 kb on + strand, within ECD_03845at 4066.309 kb on - strand, within ECD_03845at 4066.309 kb on - strand, within ECD_03845at 4066.523 kb on - strandat 4066.532 kb on + strandat 4066.533 kb on - strandat 4066.533 kb on - strandat 4066.533 kb on - strandat 4066.534 kb on + strandat 4066.534 kb on + strandat 4066.535 kb on - strandat 4066.535 kb on - strandat 4066.535 kb on - strandat 4066.535 kb on - strandat 4066.535 kb on - strandat 4066.539 kb on - strandat 4066.541 kb on - strandat 4066.574 kb on - strandat 4066.625 kb on - strandat 4066.628 kb on + strandat 4066.629 kb on - strandat 4066.673 kb on + strandat 4066.673 kb on + strandat 4066.674 kb on - strandat 4066.707 kb on - strandat 4066.745 kb on + strandat 4066.751 kb on - strandat 4066.767 kb on + strandat 4066.796 kb on + strandat 4066.997 kb on + strand, within ECD_03846at 4067.114 kb on + strand, within ECD_03846at 4067.114 kb on + strand, within ECD_03846at 4067.114 kb on + strand, within ECD_03846at 4067.114 kb on + strand, within ECD_03846at 4067.114 kb on + strand, within ECD_03846at 4067.114 kb on + strand, within ECD_03846at 4067.115 kb on - strand, within ECD_03846at 4067.117 kb on + strand, within ECD_03846at 4067.117 kb on + strand, within ECD_03846at 4067.158 kb on - strand, within ECD_03846at 4067.186 kb on - strand, within ECD_03846at 4067.294 kb on + strand, within ECD_03846at 4067.294 kb on + strand, within ECD_03846at 4067.295 kb on - strand, within ECD_03846at 4067.298 kb on + strand, within ECD_03846at 4067.298 kb on + strand, within ECD_03846at 4067.298 kb on + strand, within ECD_03846at 4067.299 kb on - strand, within ECD_03846at 4067.299 kb on - strand, within ECD_03846at 4067.492 kb on + strand, within ECD_03846at 4067.556 kb on + strand, within ECD_03846at 4067.557 kb on - strand, within ECD_03846at 4067.604 kb on + strand, within ECD_03846at 4067.635 kb on - strandat 4067.756 kb on + strandat 4067.756 kb on + strandat 4067.756 kb on + strandat 4067.757 kb on - strandat 4067.757 kb on - strandat 4067.757 kb on - strandat 4067.757 kb on - strandat 4068.041 kb on - strand, within ECD_03847at 4068.056 kb on + strand, within ECD_03847at 4068.196 kb on + strand, within ECD_03847at 4068.197 kb on - strand, within ECD_03847at 4068.197 kb on - strand, within ECD_03847at 4068.197 kb on - strand, within ECD_03847at 4068.418 kb on + strand, within ECD_03847at 4068.547 kb on + strand, within ECD_03847at 4068.548 kb on - strand, within ECD_03847at 4068.548 kb on - strand, within ECD_03847at 4068.551 kb on + strand, within ECD_03847at 4068.551 kb on + strand, within ECD_03847at 4068.552 kb on - strand, within ECD_03847at 4068.556 kb on - strand, within ECD_03847at 4068.556 kb on - strand, within ECD_03847at 4068.556 kb on - strand, within ECD_03847at 4068.556 kb on - strand, within ECD_03847at 4068.601 kb on + strand, within ECD_03847

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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4,065,820 - ECD_03845 0.49 +0.2
4,066,099 + ECD_03845 0.69 +1.4
4,066,099 + ECD_03845 0.69 -0.5
4,066,110 + ECD_03845 0.70 -1.3
4,066,110 + ECD_03845 0.70 -0.9
4,066,110 + ECD_03845 0.70 +2.1
4,066,111 - ECD_03845 0.70 -2.4
4,066,149 + ECD_03845 0.73 +1.4
4,066,308 + ECD_03845 0.84 -0.8
4,066,309 - ECD_03845 0.84 -0.2
4,066,309 - ECD_03845 0.84 -1.8
4,066,523 - +0.2
4,066,532 + +1.4
4,066,533 - -1.2
4,066,533 - +0.2
4,066,533 - -2.8
4,066,534 + +0.5
4,066,534 + +1.5
4,066,535 - +1.3
4,066,535 - +0.8
4,066,535 - +0.0
4,066,535 - -2.0
4,066,535 - -3.3
4,066,539 - -0.3
4,066,541 - +1.0
4,066,574 - -0.8
4,066,625 - +1.4
4,066,628 + -0.6
4,066,629 - +0.4
4,066,673 + +0.2
4,066,673 + -1.1
4,066,674 - +1.8
4,066,707 - +1.2
4,066,745 + -1.1
4,066,751 - -3.7
4,066,767 + -2.8
4,066,796 + -3.5
4,066,997 + ECD_03846 0.22 -5.1
4,067,114 + ECD_03846 0.35 -4.0
4,067,114 + ECD_03846 0.35 -2.8
4,067,114 + ECD_03846 0.35 -4.0
4,067,114 + ECD_03846 0.35 -2.5
4,067,114 + ECD_03846 0.35 -3.1
4,067,114 + ECD_03846 0.35 -3.9
4,067,115 - ECD_03846 0.35 -4.2
4,067,117 + ECD_03846 0.36 -3.2
4,067,117 + ECD_03846 0.36 -5.1
4,067,158 - ECD_03846 0.40 -2.7
4,067,186 - ECD_03846 0.43 -4.0
4,067,294 + ECD_03846 0.55 -4.1
4,067,294 + ECD_03846 0.55 -5.5
4,067,295 - ECD_03846 0.55 -1.4
4,067,298 + ECD_03846 0.55 -2.2
4,067,298 + ECD_03846 0.55 -3.7
4,067,298 + ECD_03846 0.55 -2.0
4,067,299 - ECD_03846 0.55 -0.8
4,067,299 - ECD_03846 0.55 -3.6
4,067,492 + ECD_03846 0.76 -2.0
4,067,556 + ECD_03846 0.83 -2.9
4,067,557 - ECD_03846 0.83 -3.1
4,067,604 + ECD_03846 0.89 -3.8
4,067,635 - -1.5
4,067,756 + -2.4
4,067,756 + -0.5
4,067,756 + -3.3
4,067,757 - -3.2
4,067,757 - -2.4
4,067,757 - -1.0
4,067,757 - -0.9
4,068,041 - ECD_03847 0.25 -3.4
4,068,056 + ECD_03847 0.26 -1.0
4,068,196 + ECD_03847 0.36 -1.7
4,068,197 - ECD_03847 0.36 -2.2
4,068,197 - ECD_03847 0.36 -0.5
4,068,197 - ECD_03847 0.36 -1.5
4,068,418 + ECD_03847 0.52 -1.1
4,068,547 + ECD_03847 0.61 -1.2
4,068,548 - ECD_03847 0.61 -0.8
4,068,548 - ECD_03847 0.61 -0.5
4,068,551 + ECD_03847 0.61 -0.9
4,068,551 + ECD_03847 0.61 -0.8
4,068,552 - ECD_03847 0.61 -2.0
4,068,556 - ECD_03847 0.62 -0.8
4,068,556 - ECD_03847 0.62 +0.1
4,068,556 - ECD_03847 0.62 -2.4
4,068,556 - ECD_03847 0.62 -2.4
4,068,601 + ECD_03847 0.65 -0.5

Or see this region's nucleotide sequence