Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03717 and ECD_03718 are separated by 261 nucleotides ECD_03718 and ECD_03719 are separated by 33 nucleotides
ECD_03717: ECD_03717 - putative carboxymethylenebutenolidase, at 3,916,719 to 3,917,528
_03717
ECD_03718: ECD_03718 - uridine phosphorylase, at 3,917,790 to 3,918,554
_03718
ECD_03719: ECD_03719 - hypothetical protein, at 3,918,588 to 3,920,078
_03719
Position (kb)
3917
3918
3919 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3916.792 kb on + strand at 3916.792 kb on + strand at 3916.792 kb on + strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.930 kb on + strand, within ECD_03717 at 3916.930 kb on + strand, within ECD_03717 at 3916.930 kb on + strand, within ECD_03717 at 3916.931 kb on - strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.933 kb on - strand, within ECD_03717 at 3916.933 kb on - strand, within ECD_03717 at 3917.001 kb on - strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.041 kb on - strand, within ECD_03717 at 3917.062 kb on + strand, within ECD_03717 at 3917.075 kb on + strand, within ECD_03717 at 3917.075 kb on + strand, within ECD_03717 at 3917.076 kb on - strand, within ECD_03717 at 3917.076 kb on - strand, within ECD_03717 at 3917.106 kb on + strand, within ECD_03717 at 3917.107 kb on - strand, within ECD_03717 at 3917.254 kb on + strand, within ECD_03717 at 3917.254 kb on + strand, within ECD_03717 at 3917.316 kb on - strand, within ECD_03717 at 3917.346 kb on + strand, within ECD_03717 at 3917.346 kb on + strand, within ECD_03717 at 3917.347 kb on - strand, within ECD_03717 at 3917.531 kb on + strand at 3917.532 kb on - strand at 3917.532 kb on - strand at 3917.532 kb on - strand at 3917.548 kb on + strand at 3917.567 kb on + strand at 3917.567 kb on + strand at 3917.567 kb on + strand at 3917.568 kb on - strand at 3917.568 kb on - strand at 3917.571 kb on + strand at 3917.571 kb on + strand at 3917.571 kb on + strand at 3917.571 kb on + strand at 3917.571 kb on + strand at 3917.572 kb on - strand at 3917.572 kb on - strand at 3917.572 kb on - strand at 3917.572 kb on - strand at 3917.572 kb on - strand at 3917.573 kb on + strand at 3917.573 kb on + strand at 3917.648 kb on - strand at 3917.648 kb on - strand at 3917.648 kb on - strand at 3917.648 kb on - strand at 3917.710 kb on + strand at 3917.711 kb on - strand at 3917.711 kb on - strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.789 kb on + strand at 3917.789 kb on + strand at 3917.789 kb on + strand at 3917.789 kb on + strand at 3917.790 kb on - strand at 3917.790 kb on - strand at 3917.790 kb on - strand at 3917.790 kb on - strand at 3917.790 kb on - strand at 3917.825 kb on + strand at 3917.846 kb on + strand at 3917.846 kb on + strand at 3917.966 kb on + strand, within ECD_03718 at 3917.966 kb on + strand, within ECD_03718 at 3917.966 kb on + strand, within ECD_03718 at 3918.008 kb on + strand, within ECD_03718 at 3918.008 kb on + strand, within ECD_03718 at 3918.009 kb on - strand, within ECD_03718 at 3918.015 kb on - strand, within ECD_03718 at 3918.015 kb on - strand, within ECD_03718 at 3918.015 kb on - strand, within ECD_03718 at 3918.092 kb on + strand, within ECD_03718 at 3918.093 kb on - strand, within ECD_03718 at 3918.095 kb on + strand, within ECD_03718 at 3918.095 kb on + strand, within ECD_03718 at 3918.096 kb on - strand, within ECD_03718 at 3918.197 kb on + strand, within ECD_03718 at 3918.198 kb on - strand, within ECD_03718 at 3918.269 kb on + strand, within ECD_03718 at 3918.270 kb on - strand, within ECD_03718 at 3918.276 kb on + strand, within ECD_03718 at 3918.276 kb on + strand, within ECD_03718 at 3918.277 kb on - strand, within ECD_03718 at 3918.299 kb on + strand, within ECD_03718 at 3918.300 kb on - strand, within ECD_03718 at 3918.300 kb on - strand, within ECD_03718 at 3918.303 kb on + strand, within ECD_03718 at 3918.304 kb on - strand, within ECD_03718 at 3918.304 kb on - strand, within ECD_03718 at 3918.304 kb on - strand, within ECD_03718 at 3918.330 kb on - strand, within ECD_03718 at 3918.330 kb on - strand, within ECD_03718 at 3918.338 kb on + strand, within ECD_03718 at 3918.338 kb on + strand, within ECD_03718 at 3918.338 kb on + strand, within ECD_03718 at 3918.338 kb on + strand, within ECD_03718 at 3918.339 kb on - strand, within ECD_03718 at 3918.339 kb on - strand, within ECD_03718 at 3918.339 kb on - strand, within ECD_03718 at 3918.372 kb on + strand, within ECD_03718 at 3918.372 kb on + strand, within ECD_03718 at 3918.372 kb on + strand, within ECD_03718 at 3918.373 kb on - strand, within ECD_03718 at 3918.373 kb on - strand, within ECD_03718 at 3918.432 kb on - strand, within ECD_03718 at 3918.589 kb on + strand at 3918.590 kb on - strand at 3918.590 kb on - strand at 3918.610 kb on - strand at 3918.639 kb on - strand at 3918.731 kb on + strand at 3918.831 kb on - strand, within ECD_03719 at 3918.865 kb on + strand, within ECD_03719 at 3918.865 kb on + strand, within ECD_03719 at 3918.866 kb on - strand, within ECD_03719 at 3918.908 kb on + strand, within ECD_03719 at 3918.909 kb on - strand, within ECD_03719 at 3918.909 kb on - strand, within ECD_03719 at 3918.966 kb on + strand, within ECD_03719 at 3918.966 kb on + strand, within ECD_03719 at 3918.966 kb on + strand, within ECD_03719 at 3918.966 kb on + strand, within ECD_03719 at 3918.966 kb on + strand, within ECD_03719 at 3918.969 kb on + strand, within ECD_03719 at 3918.970 kb on - strand, within ECD_03719 at 3919.007 kb on + strand, within ECD_03719 at 3919.007 kb on + strand, within ECD_03719 at 3919.007 kb on + strand, within ECD_03719 at 3919.007 kb on + strand, within ECD_03719 at 3919.007 kb on + strand, within ECD_03719 at 3919.008 kb on - strand, within ECD_03719 at 3919.008 kb on - strand, within ECD_03719 at 3919.008 kb on - strand, within ECD_03719 at 3919.008 kb on - strand, within ECD_03719 at 3919.008 kb on - strand, within ECD_03719 at 3919.008 kb on - strand, within ECD_03719 at 3919.008 kb on - strand, within ECD_03719 at 3919.008 kb on - strand, within ECD_03719 at 3919.008 kb on - strand, within ECD_03719 at 3919.009 kb on + strand, within ECD_03719 at 3919.009 kb on + strand, within ECD_03719 at 3919.009 kb on + strand, within ECD_03719 at 3919.010 kb on - strand, within ECD_03719 at 3919.010 kb on - strand, within ECD_03719 at 3919.010 kb on - strand, within ECD_03719 at 3919.010 kb on - strand, within ECD_03719 at 3919.010 kb on - strand, within ECD_03719 at 3919.124 kb on + strand, within ECD_03719 at 3919.124 kb on + strand, within ECD_03719 at 3919.124 kb on + strand, within ECD_03719 at 3919.125 kb on - strand, within ECD_03719 at 3919.125 kb on - strand, within ECD_03719 at 3919.125 kb on - strand, within ECD_03719 at 3919.125 kb on - strand, within ECD_03719 at 3919.125 kb on - strand, within ECD_03719 at 3919.125 kb on - strand, within ECD_03719 at 3919.128 kb on + strand, within ECD_03719 at 3919.129 kb on - strand, within ECD_03719 at 3919.196 kb on + strand, within ECD_03719 at 3919.217 kb on + strand, within ECD_03719 at 3919.339 kb on - strand, within ECD_03719 at 3919.460 kb on + strand, within ECD_03719 at 3919.497 kb on - strand, within ECD_03719 at 3919.531 kb on - strand, within ECD_03719
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 3,916,792 + -1.2 3,916,792 + +1.9 3,916,792 + +0.6 3,916,793 - +0.3 3,916,793 - +0.1 3,916,793 - -0.2 3,916,793 - -2.8 3,916,793 - -0.7 3,916,793 - +0.9 3,916,930 + ECD_03717 0.26 +0.6 3,916,930 + ECD_03717 0.26 +1.3 3,916,930 + ECD_03717 0.26 +0.7 3,916,931 - ECD_03717 0.26 -3.3 3,916,932 + ECD_03717 0.26 -0.4 3,916,932 + ECD_03717 0.26 -2.0 3,916,932 + ECD_03717 0.26 -1.0 3,916,932 + ECD_03717 0.26 -0.6 3,916,933 - ECD_03717 0.26 -0.8 3,916,933 - ECD_03717 0.26 +1.5 3,917,001 - ECD_03717 0.35 -1.9 3,917,040 + ECD_03717 0.40 -0.5 3,917,040 + ECD_03717 0.40 +0.0 3,917,040 + ECD_03717 0.40 -0.2 3,917,041 - ECD_03717 0.40 +0.2 3,917,062 + ECD_03717 0.42 -0.9 3,917,075 + ECD_03717 0.44 -0.1 3,917,075 + ECD_03717 0.44 +1.8 3,917,076 - ECD_03717 0.44 -0.4 3,917,076 - ECD_03717 0.44 +1.4 3,917,106 + ECD_03717 0.48 -0.4 3,917,107 - ECD_03717 0.48 +0.3 3,917,254 + ECD_03717 0.66 -0.5 3,917,254 + ECD_03717 0.66 -0.8 3,917,316 - ECD_03717 0.74 -0.7 3,917,346 + ECD_03717 0.77 +1.9 3,917,346 + ECD_03717 0.77 +0.1 3,917,347 - ECD_03717 0.78 +0.7 3,917,531 + +1.0 3,917,532 - -2.3 3,917,532 - -1.3 3,917,532 - -1.5 3,917,548 + +0.5 3,917,567 + -0.6 3,917,567 + +0.8 3,917,567 + +2.2 3,917,568 - +2.2 3,917,568 - +1.6 3,917,571 + +1.0 3,917,571 + +0.9 3,917,571 + -0.7 3,917,571 + +0.3 3,917,571 + +0.6 3,917,572 - +1.0 3,917,572 - -0.2 3,917,572 - +0.7 3,917,572 - +0.0 3,917,572 - +1.4 3,917,573 + -4.1 3,917,573 + +0.2 3,917,648 - +1.0 3,917,648 - +0.5 3,917,648 - +0.7 3,917,648 - +1.1 3,917,710 + -1.4 3,917,711 - +2.1 3,917,711 - +0.6 3,917,787 + +1.3 3,917,787 + -1.1 3,917,787 + +0.2 3,917,787 + +1.8 3,917,787 + +2.4 3,917,787 + +0.6 3,917,787 + -1.5 3,917,788 - -1.2 3,917,788 - +0.3 3,917,788 - +0.8 3,917,788 - -0.9 3,917,788 - -1.3 3,917,788 - +0.4 3,917,788 - +0.5 3,917,788 - +1.4 3,917,788 - +0.2 3,917,788 - +1.2 3,917,788 - +1.1 3,917,788 - +1.9 3,917,788 - +0.5 3,917,788 - -0.7 3,917,788 - +1.7 3,917,788 - -0.3 3,917,789 + +0.4 3,917,789 + +1.9 3,917,789 + +2.1 3,917,789 + -0.9 3,917,790 - +2.0 3,917,790 - -0.6 3,917,790 - +1.3 3,917,790 - -0.7 3,917,790 - -1.3 3,917,825 + +0.9 3,917,846 + +0.3 3,917,846 + +0.0 3,917,966 + ECD_03718 0.23 +0.6 3,917,966 + ECD_03718 0.23 +0.5 3,917,966 + ECD_03718 0.23 -2.8 3,918,008 + ECD_03718 0.28 +0.9 3,918,008 + ECD_03718 0.28 +1.6 3,918,009 - ECD_03718 0.29 +0.1 3,918,015 - ECD_03718 0.29 +1.2 3,918,015 - ECD_03718 0.29 +0.0 3,918,015 - ECD_03718 0.29 -2.3 3,918,092 + ECD_03718 0.39 -1.1 3,918,093 - ECD_03718 0.40 +1.0 3,918,095 + ECD_03718 0.40 +0.5 3,918,095 + ECD_03718 0.40 -1.3 3,918,096 - ECD_03718 0.40 -3.4 3,918,197 + ECD_03718 0.53 -0.0 3,918,198 - ECD_03718 0.53 -0.5 3,918,269 + ECD_03718 0.63 -0.9 3,918,270 - ECD_03718 0.63 +0.1 3,918,276 + ECD_03718 0.64 +0.5 3,918,276 + ECD_03718 0.64 -0.9 3,918,277 - ECD_03718 0.64 -1.2 3,918,299 + ECD_03718 0.67 +1.3 3,918,300 - ECD_03718 0.67 -0.6 3,918,300 - ECD_03718 0.67 -1.8 3,918,303 + ECD_03718 0.67 -1.0 3,918,304 - ECD_03718 0.67 +0.8 3,918,304 - ECD_03718 0.67 -0.2 3,918,304 - ECD_03718 0.67 +0.0 3,918,330 - ECD_03718 0.71 +0.9 3,918,330 - ECD_03718 0.71 +1.1 3,918,338 + ECD_03718 0.72 +1.4 3,918,338 + ECD_03718 0.72 +0.7 3,918,338 + ECD_03718 0.72 +0.3 3,918,338 + ECD_03718 0.72 +0.7 3,918,339 - ECD_03718 0.72 -1.2 3,918,339 - ECD_03718 0.72 -0.9 3,918,339 - ECD_03718 0.72 +0.3 3,918,372 + ECD_03718 0.76 -0.5 3,918,372 + ECD_03718 0.76 -0.9 3,918,372 + ECD_03718 0.76 +0.3 3,918,373 - ECD_03718 0.76 -0.1 3,918,373 - ECD_03718 0.76 -0.4 3,918,432 - ECD_03718 0.84 +0.5 3,918,589 + +0.7 3,918,590 - -2.3 3,918,590 - +2.4 3,918,610 - +0.8 3,918,639 - +0.3 3,918,731 + -0.1 3,918,831 - ECD_03719 0.16 +1.3 3,918,865 + ECD_03719 0.19 +0.7 3,918,865 + ECD_03719 0.19 -0.3 3,918,866 - ECD_03719 0.19 -1.5 3,918,908 + ECD_03719 0.21 +0.2 3,918,909 - ECD_03719 0.22 +0.3 3,918,909 - ECD_03719 0.22 -2.3 3,918,966 + ECD_03719 0.25 -0.8 3,918,966 + ECD_03719 0.25 +2.5 3,918,966 + ECD_03719 0.25 +2.2 3,918,966 + ECD_03719 0.25 -1.1 3,918,966 + ECD_03719 0.25 -0.4 3,918,969 + ECD_03719 0.26 -0.3 3,918,970 - ECD_03719 0.26 +0.5 3,919,007 + ECD_03719 0.28 -0.3 3,919,007 + ECD_03719 0.28 -2.8 3,919,007 + ECD_03719 0.28 +0.3 3,919,007 + ECD_03719 0.28 -1.3 3,919,007 + ECD_03719 0.28 +1.2 3,919,008 - ECD_03719 0.28 -3.7 3,919,008 - ECD_03719 0.28 +1.7 3,919,008 - ECD_03719 0.28 +0.8 3,919,008 - ECD_03719 0.28 +1.5 3,919,008 - ECD_03719 0.28 +1.7 3,919,008 - ECD_03719 0.28 -1.8 3,919,008 - ECD_03719 0.28 -4.1 3,919,008 - ECD_03719 0.28 +1.6 3,919,008 - ECD_03719 0.28 +2.4 3,919,009 + ECD_03719 0.28 -1.9 3,919,009 + ECD_03719 0.28 -2.7 3,919,009 + ECD_03719 0.28 -0.3 3,919,010 - ECD_03719 0.28 +2.1 3,919,010 - ECD_03719 0.28 -0.1 3,919,010 - ECD_03719 0.28 +0.0 3,919,010 - ECD_03719 0.28 -0.7 3,919,010 - ECD_03719 0.28 -1.2 3,919,124 + ECD_03719 0.36 -0.3 3,919,124 + ECD_03719 0.36 -1.7 3,919,124 + ECD_03719 0.36 +0.2 3,919,125 - ECD_03719 0.36 -2.1 3,919,125 - ECD_03719 0.36 -0.8 3,919,125 - ECD_03719 0.36 +1.6 3,919,125 - ECD_03719 0.36 -1.4 3,919,125 - ECD_03719 0.36 +2.7 3,919,125 - ECD_03719 0.36 +2.9 3,919,128 + ECD_03719 0.36 -1.1 3,919,129 - ECD_03719 0.36 -1.8 3,919,196 + ECD_03719 0.41 -0.1 3,919,217 + ECD_03719 0.42 -0.5 3,919,339 - ECD_03719 0.50 +0.1 3,919,460 + ECD_03719 0.58 +0.2 3,919,497 - ECD_03719 0.61 +0.9 3,919,531 - ECD_03719 0.63 +0.2
Or see this region's nucleotide sequence