Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03649 and ECD_03650 are separated by 2 nucleotides ECD_03650 and ECD_03651 are separated by 51 nucleotides
ECD_03649: ECD_03649 - dihydroxyacid dehydratase, at 3,843,720 to 3,845,570
_03649
ECD_03650: ECD_03650 - l-threonine dehydratase, biosynthetic; also known as threonine deaminase, at 3,845,573 to 3,847,117
_03650
ECD_03651: ECD_03651 - transcriptional activator of ilvC; autorepressor, at 3,847,169 to 3,848,062
_03651
Position (kb)
3845
3846
3847
3848 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3844.626 kb on - strand, within ECD_03649 at 3844.655 kb on + strand, within ECD_03649 at 3844.680 kb on + strand, within ECD_03649 at 3844.680 kb on + strand, within ECD_03649 at 3844.681 kb on - strand, within ECD_03649 at 3844.681 kb on - strand, within ECD_03649 at 3844.681 kb on - strand, within ECD_03649 at 3844.775 kb on - strand, within ECD_03649 at 3844.775 kb on - strand, within ECD_03649 at 3844.775 kb on - strand, within ECD_03649 at 3844.809 kb on + strand, within ECD_03649 at 3844.810 kb on - strand, within ECD_03649 at 3844.810 kb on - strand, within ECD_03649 at 3844.817 kb on + strand, within ECD_03649 at 3844.965 kb on + strand, within ECD_03649 at 3844.966 kb on - strand, within ECD_03649 at 3844.966 kb on - strand, within ECD_03649 at 3844.966 kb on - strand, within ECD_03649 at 3844.995 kb on + strand, within ECD_03649 at 3844.996 kb on - strand, within ECD_03649 at 3845.000 kb on + strand, within ECD_03649 at 3845.000 kb on + strand, within ECD_03649 at 3845.001 kb on - strand, within ECD_03649 at 3845.001 kb on - strand, within ECD_03649 at 3845.146 kb on + strand, within ECD_03649 at 3845.146 kb on + strand, within ECD_03649 at 3845.158 kb on - strand, within ECD_03649 at 3845.357 kb on + strand, within ECD_03649 at 3845.358 kb on - strand, within ECD_03649 at 3845.358 kb on - strand, within ECD_03649 at 3845.384 kb on + strand, within ECD_03649 at 3845.392 kb on + strand at 3845.398 kb on + strand at 3845.398 kb on + strand at 3845.399 kb on - strand at 3845.618 kb on + strand at 3845.618 kb on + strand at 3845.619 kb on - strand at 3845.622 kb on + strand at 3845.622 kb on + strand at 3845.623 kb on - strand at 3845.649 kb on - strand at 3845.772 kb on - strand, within ECD_03650 at 3846.276 kb on + strand, within ECD_03650 at 3846.303 kb on + strand, within ECD_03650 at 3846.334 kb on - strand, within ECD_03650 at 3846.344 kb on + strand, within ECD_03650 at 3846.403 kb on - strand, within ECD_03650 at 3846.468 kb on - strand, within ECD_03650 at 3846.508 kb on + strand, within ECD_03650 at 3846.508 kb on + strand, within ECD_03650 at 3846.677 kb on + strand, within ECD_03650 at 3846.677 kb on + strand, within ECD_03650 at 3846.678 kb on - strand, within ECD_03650 at 3846.822 kb on + strand, within ECD_03650 at 3846.823 kb on - strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.835 kb on + strand, within ECD_03650 at 3846.835 kb on + strand, within ECD_03650 at 3846.878 kb on + strand, within ECD_03650 at 3846.937 kb on + strand, within ECD_03650 at 3846.937 kb on + strand, within ECD_03650 at 3846.941 kb on + strand, within ECD_03650 at 3846.941 kb on + strand, within ECD_03650 at 3846.941 kb on + strand, within ECD_03650 at 3846.942 kb on - strand, within ECD_03650 at 3846.942 kb on - strand, within ECD_03650 at 3846.942 kb on - strand, within ECD_03650 at 3847.062 kb on - strand at 3847.145 kb on - strand at 3847.480 kb on + strand, within ECD_03651 at 3847.484 kb on - strand, within ECD_03651 at 3847.566 kb on - strand, within ECD_03651 at 3847.687 kb on + strand, within ECD_03651 at 3847.687 kb on + strand, within ECD_03651 at 3847.690 kb on + strand, within ECD_03651 at 3847.690 kb on + strand, within ECD_03651 at 3847.691 kb on - strand, within ECD_03651 at 3847.691 kb on - strand, within ECD_03651 at 3847.691 kb on - strand, within ECD_03651 at 3847.697 kb on - strand, within ECD_03651 at 3847.697 kb on - strand, within ECD_03651 at 3847.755 kb on + strand, within ECD_03651 at 3847.780 kb on + strand, within ECD_03651 at 3847.781 kb on - strand, within ECD_03651 at 3847.781 kb on - strand, within ECD_03651 at 3847.781 kb on - strand, within ECD_03651 at 3847.784 kb on + strand, within ECD_03651 at 3847.784 kb on + strand, within ECD_03651 at 3847.785 kb on - strand, within ECD_03651 at 3847.785 kb on - strand, within ECD_03651 at 3847.785 kb on - strand, within ECD_03651
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 3,844,626 - ECD_03649 0.49 -2.9 3,844,655 + ECD_03649 0.51 +2.2 3,844,680 + ECD_03649 0.52 -0.3 3,844,680 + ECD_03649 0.52 -0.2 3,844,681 - ECD_03649 0.52 +2.4 3,844,681 - ECD_03649 0.52 +1.3 3,844,681 - ECD_03649 0.52 +1.4 3,844,775 - ECD_03649 0.57 +2.2 3,844,775 - ECD_03649 0.57 +1.2 3,844,775 - ECD_03649 0.57 +2.8 3,844,809 + ECD_03649 0.59 +0.6 3,844,810 - ECD_03649 0.59 +1.4 3,844,810 - ECD_03649 0.59 +0.2 3,844,817 + ECD_03649 0.59 +1.9 3,844,965 + ECD_03649 0.67 +2.2 3,844,966 - ECD_03649 0.67 -1.4 3,844,966 - ECD_03649 0.67 -1.2 3,844,966 - ECD_03649 0.67 +1.3 3,844,995 + ECD_03649 0.69 +1.3 3,844,996 - ECD_03649 0.69 -2.9 3,845,000 + ECD_03649 0.69 -1.6 3,845,000 + ECD_03649 0.69 +0.3 3,845,001 - ECD_03649 0.69 -1.8 3,845,001 - ECD_03649 0.69 -0.0 3,845,146 + ECD_03649 0.77 +1.5 3,845,146 + ECD_03649 0.77 +1.5 3,845,158 - ECD_03649 0.78 -1.6 3,845,357 + ECD_03649 0.88 -1.5 3,845,358 - ECD_03649 0.88 +2.1 3,845,358 - ECD_03649 0.88 +0.9 3,845,384 + ECD_03649 0.90 +1.3 3,845,392 + -0.8 3,845,398 + +0.9 3,845,398 + +0.7 3,845,399 - +1.1 3,845,618 + +1.7 3,845,618 + +0.7 3,845,619 - +0.3 3,845,622 + -3.0 3,845,622 + +1.8 3,845,623 - +0.6 3,845,649 - +2.7 3,845,772 - ECD_03650 0.13 -4.3 3,846,276 + ECD_03650 0.46 -3.1 3,846,303 + ECD_03650 0.47 -2.1 3,846,334 - ECD_03650 0.49 +3.5 3,846,344 + ECD_03650 0.50 +0.4 3,846,403 - ECD_03650 0.54 +0.7 3,846,468 - ECD_03650 0.58 +0.0 3,846,508 + ECD_03650 0.61 -1.3 3,846,508 + ECD_03650 0.61 +0.5 3,846,677 + ECD_03650 0.71 +1.7 3,846,677 + ECD_03650 0.71 +1.5 3,846,678 - ECD_03650 0.72 +2.0 3,846,822 + ECD_03650 0.81 +0.0 3,846,823 - ECD_03650 0.81 +2.9 3,846,833 + ECD_03650 0.82 +1.3 3,846,833 + ECD_03650 0.82 +0.2 3,846,833 + ECD_03650 0.82 -0.9 3,846,833 + ECD_03650 0.82 -0.0 3,846,833 + ECD_03650 0.82 -0.5 3,846,835 + ECD_03650 0.82 +0.2 3,846,835 + ECD_03650 0.82 -0.8 3,846,878 + ECD_03650 0.84 +0.2 3,846,937 + ECD_03650 0.88 -1.5 3,846,937 + ECD_03650 0.88 +0.8 3,846,941 + ECD_03650 0.89 +0.7 3,846,941 + ECD_03650 0.89 +0.7 3,846,941 + ECD_03650 0.89 +0.9 3,846,942 - ECD_03650 0.89 +1.5 3,846,942 - ECD_03650 0.89 +2.1 3,846,942 - ECD_03650 0.89 -1.2 3,847,062 - -4.1 3,847,145 - +0.7 3,847,480 + ECD_03651 0.35 -0.4 3,847,484 - ECD_03651 0.35 -3.1 3,847,566 - ECD_03651 0.44 +1.6 3,847,687 + ECD_03651 0.58 +0.3 3,847,687 + ECD_03651 0.58 +1.2 3,847,690 + ECD_03651 0.58 +1.2 3,847,690 + ECD_03651 0.58 -0.3 3,847,691 - ECD_03651 0.58 +1.4 3,847,691 - ECD_03651 0.58 +1.7 3,847,691 - ECD_03651 0.58 -1.9 3,847,697 - ECD_03651 0.59 +1.2 3,847,697 - ECD_03651 0.59 -1.7 3,847,755 + ECD_03651 0.66 -2.0 3,847,780 + ECD_03651 0.68 +0.5 3,847,781 - ECD_03651 0.68 +1.4 3,847,781 - ECD_03651 0.68 +0.6 3,847,781 - ECD_03651 0.68 -2.4 3,847,784 + ECD_03651 0.69 -2.8 3,847,784 + ECD_03651 0.69 -0.8 3,847,785 - ECD_03651 0.69 -0.6 3,847,785 - ECD_03651 0.69 +1.6 3,847,785 - ECD_03651 0.69 +1.6
Or see this region's nucleotide sequence