Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03590 and ECD_03591 are separated by 242 nucleotides ECD_03591 and ECD_03592 are separated by 220 nucleotides ECD_03592 and ECD_03593 are separated by 90 nucleotides
ECD_03590: ECD_03590 - tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase, at 3,775,624 to 3,776,988
_03590
ECD_03591: ECD_03591 - tryptophanase leader peptide, at 3,777,231 to 3,777,305
_03591
ECD_03592: ECD_03592 - tryptophanase/L-cysteine desulfhydrase, PLP-dependent, at 3,777,526 to 3,778,941
_03592
ECD_03593: ECD_03593 - tryptophan transporter of low affinity, at 3,779,032 to 3,780,279
_03593
Position (kb)
3777
3778
3779 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3776.628 kb on + strand, within ECD_03590 at 3776.802 kb on - strand, within ECD_03590 at 3776.802 kb on - strand, within ECD_03590 at 3776.842 kb on - strand, within ECD_03590 at 3776.912 kb on + strand at 3776.977 kb on - strand at 3776.982 kb on + strand at 3776.996 kb on + strand at 3776.997 kb on - strand at 3777.282 kb on - strand, within ECD_03591 at 3777.446 kb on + strand at 3777.589 kb on - strand at 3777.618 kb on + strand at 3777.622 kb on - strand at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.763 kb on + strand, within ECD_03592 at 3777.802 kb on + strand, within ECD_03592 at 3777.808 kb on + strand, within ECD_03592 at 3777.809 kb on - strand, within ECD_03592 at 3777.809 kb on - strand, within ECD_03592 at 3777.851 kb on - strand, within ECD_03592 at 3777.851 kb on - strand, within ECD_03592 at 3777.853 kb on - strand, within ECD_03592 at 3777.926 kb on - strand, within ECD_03592 at 3777.985 kb on + strand, within ECD_03592 at 3778.018 kb on + strand, within ECD_03592 at 3778.026 kb on + strand, within ECD_03592 at 3778.027 kb on - strand, within ECD_03592 at 3778.093 kb on + strand, within ECD_03592 at 3778.093 kb on + strand, within ECD_03592 at 3778.093 kb on + strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.096 kb on - strand, within ECD_03592 at 3778.117 kb on - strand, within ECD_03592 at 3778.117 kb on - strand, within ECD_03592 at 3778.165 kb on + strand, within ECD_03592 at 3778.166 kb on - strand, within ECD_03592 at 3778.184 kb on - strand, within ECD_03592 at 3778.200 kb on - strand, within ECD_03592 at 3778.258 kb on + strand, within ECD_03592 at 3778.258 kb on + strand, within ECD_03592 at 3778.258 kb on + strand, within ECD_03592 at 3778.303 kb on + strand, within ECD_03592 at 3778.312 kb on - strand, within ECD_03592 at 3778.312 kb on - strand, within ECD_03592 at 3778.396 kb on + strand, within ECD_03592 at 3778.396 kb on + strand, within ECD_03592 at 3778.397 kb on - strand, within ECD_03592 at 3778.397 kb on - strand, within ECD_03592 at 3778.444 kb on + strand, within ECD_03592 at 3778.445 kb on - strand, within ECD_03592 at 3778.445 kb on - strand, within ECD_03592 at 3778.492 kb on + strand, within ECD_03592 at 3778.493 kb on - strand, within ECD_03592 at 3778.493 kb on - strand, within ECD_03592 at 3778.522 kb on + strand, within ECD_03592 at 3778.523 kb on - strand, within ECD_03592 at 3778.539 kb on - strand, within ECD_03592 at 3778.539 kb on - strand, within ECD_03592 at 3778.539 kb on - strand, within ECD_03592 at 3778.543 kb on + strand, within ECD_03592 at 3778.544 kb on - strand, within ECD_03592 at 3778.544 kb on - strand, within ECD_03592 at 3778.544 kb on - strand, within ECD_03592 at 3778.621 kb on - strand, within ECD_03592 at 3778.682 kb on - strand, within ECD_03592 at 3778.684 kb on - strand, within ECD_03592 at 3778.805 kb on - strand at 3778.806 kb on + strand at 3778.806 kb on + strand at 3778.806 kb on + strand at 3778.819 kb on - strand at 3778.870 kb on - strand at 3778.891 kb on + strand at 3778.891 kb on + strand at 3778.943 kb on + strand at 3778.960 kb on + strand at 3778.961 kb on - strand at 3778.962 kb on + strand at 3778.963 kb on - strand at 3779.085 kb on - strand at 3779.085 kb on - strand at 3779.085 kb on - strand at 3779.097 kb on - strand at 3779.110 kb on - strand at 3779.110 kb on - strand at 3779.120 kb on + strand at 3779.326 kb on - strand, within ECD_03593 at 3779.335 kb on + strand, within ECD_03593 at 3779.335 kb on + strand, within ECD_03593 at 3779.335 kb on + strand, within ECD_03593 at 3779.335 kb on + strand, within ECD_03593 at 3779.336 kb on - strand, within ECD_03593 at 3779.336 kb on - strand, within ECD_03593 at 3779.336 kb on - strand, within ECD_03593 at 3779.336 kb on - strand, within ECD_03593 at 3779.341 kb on + strand, within ECD_03593 at 3779.341 kb on + strand, within ECD_03593 at 3779.343 kb on + strand, within ECD_03593 at 3779.343 kb on + strand, within ECD_03593 at 3779.343 kb on + strand, within ECD_03593 at 3779.343 kb on + strand, within ECD_03593 at 3779.344 kb on - strand, within ECD_03593 at 3779.404 kb on - strand, within ECD_03593 at 3779.412 kb on + strand, within ECD_03593 at 3779.413 kb on - strand, within ECD_03593 at 3779.413 kb on - strand, within ECD_03593 at 3779.413 kb on - strand, within ECD_03593 at 3779.484 kb on + strand, within ECD_03593 at 3779.557 kb on + strand, within ECD_03593 at 3779.603 kb on - strand, within ECD_03593 at 3779.603 kb on - strand, within ECD_03593 at 3779.603 kb on - strand, within ECD_03593 at 3779.611 kb on + strand, within ECD_03593 at 3779.611 kb on + strand, within ECD_03593 at 3779.614 kb on - strand, within ECD_03593 at 3779.614 kb on - strand, within ECD_03593 at 3779.614 kb on - strand, within ECD_03593 at 3779.703 kb on + strand, within ECD_03593 at 3779.704 kb on - strand, within ECD_03593 at 3779.704 kb on - strand, within ECD_03593 at 3779.723 kb on + strand, within ECD_03593 at 3779.752 kb on + strand, within ECD_03593 at 3779.753 kb on - strand, within ECD_03593 at 3779.753 kb on - strand, within ECD_03593 at 3779.767 kb on + strand, within ECD_03593 at 3779.768 kb on - strand, within ECD_03593 at 3779.784 kb on + strand, within ECD_03593 at 3779.905 kb on - strand, within ECD_03593 at 3779.909 kb on + strand, within ECD_03593 at 3779.909 kb on + strand, within ECD_03593 at 3779.909 kb on + strand, within ECD_03593 at 3779.909 kb on + strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593 at 3779.910 kb on - strand, within ECD_03593
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 3,776,628 + ECD_03590 0.74 -2.0 3,776,802 - ECD_03590 0.86 -2.0 3,776,802 - ECD_03590 0.86 +0.5 3,776,842 - ECD_03590 0.89 -2.1 3,776,912 + -1.2 3,776,977 - -2.0 3,776,982 + -0.2 3,776,996 + +0.4 3,776,997 - +1.1 3,777,282 - ECD_03591 0.68 -2.3 3,777,446 + +0.7 3,777,589 - -3.5 3,777,618 + +0.3 3,777,622 - -2.1 3,777,712 - ECD_03592 0.13 -0.3 3,777,712 - ECD_03592 0.13 -3.3 3,777,712 - ECD_03592 0.13 -2.5 3,777,712 - ECD_03592 0.13 -2.1 3,777,712 - ECD_03592 0.13 -1.8 3,777,763 + ECD_03592 0.17 -2.9 3,777,802 + ECD_03592 0.19 -3.2 3,777,808 + ECD_03592 0.20 +2.5 3,777,809 - ECD_03592 0.20 +0.0 3,777,809 - ECD_03592 0.20 -4.1 3,777,851 - ECD_03592 0.23 -0.9 3,777,851 - ECD_03592 0.23 +1.9 3,777,853 - ECD_03592 0.23 -3.1 3,777,926 - ECD_03592 0.28 +0.9 3,777,985 + ECD_03592 0.32 +0.0 3,778,018 + ECD_03592 0.35 +1.5 3,778,026 + ECD_03592 0.35 -2.3 3,778,027 - ECD_03592 0.35 +2.5 3,778,093 + ECD_03592 0.40 -2.0 3,778,093 + ECD_03592 0.40 -2.1 3,778,093 + ECD_03592 0.40 +0.6 3,778,094 - ECD_03592 0.40 -3.4 3,778,094 - ECD_03592 0.40 +1.2 3,778,094 - ECD_03592 0.40 -0.4 3,778,094 - ECD_03592 0.40 -0.2 3,778,094 - ECD_03592 0.40 -2.5 3,778,096 - ECD_03592 0.40 +0.1 3,778,117 - ECD_03592 0.42 +0.9 3,778,117 - ECD_03592 0.42 +0.8 3,778,165 + ECD_03592 0.45 -1.4 3,778,166 - ECD_03592 0.45 -0.3 3,778,184 - ECD_03592 0.46 -0.4 3,778,200 - ECD_03592 0.48 -1.1 3,778,258 + ECD_03592 0.52 +0.2 3,778,258 + ECD_03592 0.52 -0.4 3,778,258 + ECD_03592 0.52 -0.3 3,778,303 + ECD_03592 0.55 +1.6 3,778,312 - ECD_03592 0.56 -2.1 3,778,312 - ECD_03592 0.56 +1.9 3,778,396 + ECD_03592 0.61 -0.5 3,778,396 + ECD_03592 0.61 +0.7 3,778,397 - ECD_03592 0.62 -0.7 3,778,397 - ECD_03592 0.62 +0.1 3,778,444 + ECD_03592 0.65 -4.1 3,778,445 - ECD_03592 0.65 -1.2 3,778,445 - ECD_03592 0.65 -0.1 3,778,492 + ECD_03592 0.68 -1.3 3,778,493 - ECD_03592 0.68 +0.0 3,778,493 - ECD_03592 0.68 +0.8 3,778,522 + ECD_03592 0.70 +2.1 3,778,523 - ECD_03592 0.70 -0.3 3,778,539 - ECD_03592 0.72 +1.1 3,778,539 - ECD_03592 0.72 -1.3 3,778,539 - ECD_03592 0.72 -2.2 3,778,543 + ECD_03592 0.72 -1.2 3,778,544 - ECD_03592 0.72 -3.6 3,778,544 - ECD_03592 0.72 -0.3 3,778,544 - ECD_03592 0.72 +0.7 3,778,621 - ECD_03592 0.77 +0.1 3,778,682 - ECD_03592 0.82 -0.3 3,778,684 - ECD_03592 0.82 -1.3 3,778,805 - -0.1 3,778,806 + +0.7 3,778,806 + -3.6 3,778,806 + -2.0 3,778,819 - -0.2 3,778,870 - -2.9 3,778,891 + +0.3 3,778,891 + +0.5 3,778,943 + +1.5 3,778,960 + +0.1 3,778,961 - +0.6 3,778,962 + +1.0 3,778,963 - -0.4 3,779,085 - -1.4 3,779,085 - +1.0 3,779,085 - +0.0 3,779,097 - -2.8 3,779,110 - +1.2 3,779,110 - -1.0 3,779,120 + +0.6 3,779,326 - ECD_03593 0.24 -0.5 3,779,335 + ECD_03593 0.24 +1.9 3,779,335 + ECD_03593 0.24 -0.2 3,779,335 + ECD_03593 0.24 -1.4 3,779,335 + ECD_03593 0.24 +0.1 3,779,336 - ECD_03593 0.24 -0.9 3,779,336 - ECD_03593 0.24 -0.6 3,779,336 - ECD_03593 0.24 +3.0 3,779,336 - ECD_03593 0.24 +3.0 3,779,341 + ECD_03593 0.25 -1.9 3,779,341 + ECD_03593 0.25 +1.0 3,779,343 + ECD_03593 0.25 -2.8 3,779,343 + ECD_03593 0.25 -0.0 3,779,343 + ECD_03593 0.25 -2.8 3,779,343 + ECD_03593 0.25 -1.9 3,779,344 - ECD_03593 0.25 +1.7 3,779,404 - ECD_03593 0.30 -1.0 3,779,412 + ECD_03593 0.30 -3.1 3,779,413 - ECD_03593 0.31 +0.5 3,779,413 - ECD_03593 0.31 -0.3 3,779,413 - ECD_03593 0.31 -2.2 3,779,484 + ECD_03593 0.36 -0.5 3,779,557 + ECD_03593 0.42 +0.1 3,779,603 - ECD_03593 0.46 -0.0 3,779,603 - ECD_03593 0.46 -1.4 3,779,603 - ECD_03593 0.46 +0.8 3,779,611 + ECD_03593 0.46 +0.6 3,779,611 + ECD_03593 0.46 -0.9 3,779,614 - ECD_03593 0.47 -0.8 3,779,614 - ECD_03593 0.47 +0.4 3,779,614 - ECD_03593 0.47 +1.8 3,779,703 + ECD_03593 0.54 -0.7 3,779,704 - ECD_03593 0.54 -0.1 3,779,704 - ECD_03593 0.54 +0.3 3,779,723 + ECD_03593 0.55 +0.6 3,779,752 + ECD_03593 0.58 +0.4 3,779,753 - ECD_03593 0.58 +2.4 3,779,753 - ECD_03593 0.58 +0.3 3,779,767 + ECD_03593 0.59 -2.4 3,779,768 - ECD_03593 0.59 -0.2 3,779,784 + ECD_03593 0.60 -1.0 3,779,905 - ECD_03593 0.70 -0.7 3,779,909 + ECD_03593 0.70 -0.5 3,779,909 + ECD_03593 0.70 +2.0 3,779,909 + ECD_03593 0.70 +1.6 3,779,909 + ECD_03593 0.70 +0.7 3,779,910 - ECD_03593 0.70 -1.4 3,779,910 - ECD_03593 0.70 -1.2 3,779,910 - ECD_03593 0.70 +1.0 3,779,910 - ECD_03593 0.70 +1.5 3,779,910 - ECD_03593 0.70 +0.6 3,779,910 - ECD_03593 0.70 +0.9 3,779,910 - ECD_03593 0.70 -1.9
Or see this region's nucleotide sequence