Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03590 and ECD_03591 are separated by 242 nucleotides ECD_03591 and ECD_03592 are separated by 220 nucleotides
ECD_03590: ECD_03590 - tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase, at 3,775,624 to 3,776,988
_03590
ECD_03591: ECD_03591 - tryptophanase leader peptide, at 3,777,231 to 3,777,305
_03591
ECD_03592: ECD_03592 - tryptophanase/L-cysteine desulfhydrase, PLP-dependent, at 3,777,526 to 3,778,941
_03592
Position (kb)
3777
3778 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3776.628 kb on + strand, within ECD_03590 at 3776.802 kb on - strand, within ECD_03590 at 3776.802 kb on - strand, within ECD_03590 at 3776.842 kb on - strand, within ECD_03590 at 3776.912 kb on + strand at 3776.977 kb on - strand at 3776.982 kb on + strand at 3776.996 kb on + strand at 3776.997 kb on - strand at 3777.282 kb on - strand, within ECD_03591 at 3777.446 kb on + strand at 3777.589 kb on - strand at 3777.618 kb on + strand at 3777.622 kb on - strand at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.763 kb on + strand, within ECD_03592 at 3777.802 kb on + strand, within ECD_03592 at 3777.808 kb on + strand, within ECD_03592 at 3777.809 kb on - strand, within ECD_03592 at 3777.809 kb on - strand, within ECD_03592 at 3777.851 kb on - strand, within ECD_03592 at 3777.851 kb on - strand, within ECD_03592 at 3777.853 kb on - strand, within ECD_03592 at 3777.926 kb on - strand, within ECD_03592 at 3777.985 kb on + strand, within ECD_03592 at 3778.018 kb on + strand, within ECD_03592 at 3778.026 kb on + strand, within ECD_03592 at 3778.027 kb on - strand, within ECD_03592 at 3778.093 kb on + strand, within ECD_03592 at 3778.093 kb on + strand, within ECD_03592 at 3778.093 kb on + strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.094 kb on - strand, within ECD_03592 at 3778.096 kb on - strand, within ECD_03592 at 3778.117 kb on - strand, within ECD_03592 at 3778.117 kb on - strand, within ECD_03592 at 3778.165 kb on + strand, within ECD_03592 at 3778.166 kb on - strand, within ECD_03592 at 3778.184 kb on - strand, within ECD_03592 at 3778.200 kb on - strand, within ECD_03592 at 3778.258 kb on + strand, within ECD_03592 at 3778.258 kb on + strand, within ECD_03592 at 3778.258 kb on + strand, within ECD_03592 at 3778.303 kb on + strand, within ECD_03592
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 3,776,628 + ECD_03590 0.74 -2.0 3,776,802 - ECD_03590 0.86 -2.0 3,776,802 - ECD_03590 0.86 +0.5 3,776,842 - ECD_03590 0.89 -2.1 3,776,912 + -1.2 3,776,977 - -2.0 3,776,982 + -0.2 3,776,996 + +0.4 3,776,997 - +1.1 3,777,282 - ECD_03591 0.68 -2.3 3,777,446 + +0.7 3,777,589 - -3.5 3,777,618 + +0.3 3,777,622 - -2.1 3,777,712 - ECD_03592 0.13 -0.3 3,777,712 - ECD_03592 0.13 -3.3 3,777,712 - ECD_03592 0.13 -2.5 3,777,712 - ECD_03592 0.13 -2.1 3,777,712 - ECD_03592 0.13 -1.8 3,777,763 + ECD_03592 0.17 -2.9 3,777,802 + ECD_03592 0.19 -3.2 3,777,808 + ECD_03592 0.20 +2.5 3,777,809 - ECD_03592 0.20 +0.0 3,777,809 - ECD_03592 0.20 -4.1 3,777,851 - ECD_03592 0.23 -0.9 3,777,851 - ECD_03592 0.23 +1.9 3,777,853 - ECD_03592 0.23 -3.1 3,777,926 - ECD_03592 0.28 +0.9 3,777,985 + ECD_03592 0.32 +0.0 3,778,018 + ECD_03592 0.35 +1.5 3,778,026 + ECD_03592 0.35 -2.3 3,778,027 - ECD_03592 0.35 +2.5 3,778,093 + ECD_03592 0.40 -2.0 3,778,093 + ECD_03592 0.40 -2.1 3,778,093 + ECD_03592 0.40 +0.6 3,778,094 - ECD_03592 0.40 -3.4 3,778,094 - ECD_03592 0.40 +1.2 3,778,094 - ECD_03592 0.40 -0.4 3,778,094 - ECD_03592 0.40 -0.2 3,778,094 - ECD_03592 0.40 -2.5 3,778,096 - ECD_03592 0.40 +0.1 3,778,117 - ECD_03592 0.42 +0.9 3,778,117 - ECD_03592 0.42 +0.8 3,778,165 + ECD_03592 0.45 -1.4 3,778,166 - ECD_03592 0.45 -0.3 3,778,184 - ECD_03592 0.46 -0.4 3,778,200 - ECD_03592 0.48 -1.1 3,778,258 + ECD_03592 0.52 +0.2 3,778,258 + ECD_03592 0.52 -0.4 3,778,258 + ECD_03592 0.52 -0.3 3,778,303 + ECD_03592 0.55 +1.6
Or see this region's nucleotide sequence