Strain Fitness in Escherichia coli BL21 around ECD_03535

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03532 and ECD_03533 are separated by 64 nucleotidesECD_03533 and ECD_03534 are separated by 42 nucleotidesECD_03534 and ECD_03535 are separated by 26 nucleotidesECD_03535 and ECD_03536 overlap by 44 nucleotides ECD_03532: ECD_03532 - hypothetical protein, at 3,720,330 to 3,720,743 _03532 ECD_03533: ECD_03533 - hypothetical protein, at 3,720,808 to 3,720,990 _03533 ECD_03534: ECD_03534 - hypothetical protein, at 3,721,033 to 3,721,179 _03534 ECD_03535: ECD_03535 - putative IS protein, at 3,721,206 to 3,721,562 _03535 ECD_03536: ECD_03536 - IS30 transposase, at 3,721,519 to 3,722,643 _03536 ECD_03537: ECD_03537 - putative uncharacterized protein, yeeV-like protein, at 3,722,541 to 3,722,906 _03537 Position (kb) 3721 3722Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3720.450 kb on + strand, within ECD_03532at 3720.450 kb on + strand, within ECD_03532at 3720.499 kb on + strand, within ECD_03532at 3720.500 kb on - strand, within ECD_03532at 3720.573 kb on + strand, within ECD_03532at 3721.061 kb on + strand, within ECD_03534at 3721.071 kb on + strand, within ECD_03534at 3721.113 kb on + strand, within ECD_03534at 3721.162 kb on + strand, within ECD_03534at 3721.341 kb on + strand, within ECD_03535at 3721.361 kb on + strand, within ECD_03535at 3721.364 kb on + strand, within ECD_03535at 3721.460 kb on - strand, within ECD_03535at 3721.565 kb on + strandat 3721.565 kb on + strandat 3721.635 kb on + strand, within ECD_03536at 3721.636 kb on - strand, within ECD_03536at 3721.658 kb on + strand, within ECD_03536at 3721.685 kb on + strand, within ECD_03536at 3721.757 kb on + strand, within ECD_03536at 3721.761 kb on + strand, within ECD_03536at 3721.761 kb on + strand, within ECD_03536at 3721.761 kb on + strand, within ECD_03536at 3721.761 kb on + strand, within ECD_03536at 3721.762 kb on - strand, within ECD_03536at 3721.762 kb on - strand, within ECD_03536at 3721.762 kb on - strand, within ECD_03536at 3721.762 kb on - strand, within ECD_03536at 3721.762 kb on - strand, within ECD_03536at 3721.826 kb on - strand, within ECD_03536at 3721.829 kb on - strand, within ECD_03536at 3721.845 kb on + strand, within ECD_03536at 3721.845 kb on + strand, within ECD_03536at 3721.846 kb on - strand, within ECD_03536at 3721.889 kb on + strand, within ECD_03536at 3721.905 kb on - strand, within ECD_03536at 3721.962 kb on - strand, within ECD_03536at 3721.962 kb on - strand, within ECD_03536at 3721.962 kb on - strand, within ECD_03536at 3722.039 kb on - strand, within ECD_03536at 3722.060 kb on + strand, within ECD_03536at 3722.073 kb on + strand, within ECD_03536at 3722.073 kb on + strand, within ECD_03536at 3722.074 kb on - strand, within ECD_03536at 3722.074 kb on - strand, within ECD_03536at 3722.075 kb on + strand, within ECD_03536at 3722.075 kb on + strand, within ECD_03536at 3722.075 kb on + strand, within ECD_03536at 3722.076 kb on - strand, within ECD_03536at 3722.098 kb on - strand, within ECD_03536at 3722.142 kb on + strand, within ECD_03536at 3722.148 kb on + strand, within ECD_03536at 3722.149 kb on - strand, within ECD_03536at 3722.149 kb on - strand, within ECD_03536at 3722.153 kb on + strand, within ECD_03536at 3722.153 kb on + strand, within ECD_03536at 3722.153 kb on + strand, within ECD_03536at 3722.154 kb on - strand, within ECD_03536at 3722.154 kb on - strand, within ECD_03536at 3722.154 kb on - strand, within ECD_03536at 3722.231 kb on + strand, within ECD_03536at 3722.232 kb on - strand, within ECD_03536at 3722.256 kb on + strand, within ECD_03536at 3722.257 kb on - strand, within ECD_03536at 3722.258 kb on + strand, within ECD_03536at 3722.258 kb on + strand, within ECD_03536at 3722.259 kb on - strand, within ECD_03536at 3722.288 kb on - strand, within ECD_03536at 3722.289 kb on + strand, within ECD_03536at 3722.289 kb on + strand, within ECD_03536at 3722.424 kb on - strand, within ECD_03536at 3722.430 kb on + strand, within ECD_03536at 3722.513 kb on + strand, within ECD_03536at 3722.524 kb on + strand, within ECD_03536

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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3,720,450 + ECD_03532 0.29 +0.1
3,720,450 + ECD_03532 0.29 +2.6
3,720,499 + ECD_03532 0.41 +1.1
3,720,500 - ECD_03532 0.41 -1.1
3,720,573 + ECD_03532 0.59 -0.8
3,721,061 + ECD_03534 0.19 -1.2
3,721,071 + ECD_03534 0.26 -0.2
3,721,113 + ECD_03534 0.54 -3.8
3,721,162 + ECD_03534 0.88 -1.2
3,721,341 + ECD_03535 0.38 -0.2
3,721,361 + ECD_03535 0.43 +2.1
3,721,364 + ECD_03535 0.44 +0.3
3,721,460 - ECD_03535 0.71 +0.4
3,721,565 + -0.4
3,721,565 + -4.1
3,721,635 + ECD_03536 0.10 -3.1
3,721,636 - ECD_03536 0.10 -2.8
3,721,658 + ECD_03536 0.12 +2.5
3,721,685 + ECD_03536 0.15 -2.4
3,721,757 + ECD_03536 0.21 +1.2
3,721,761 + ECD_03536 0.22 -0.1
3,721,761 + ECD_03536 0.22 -1.0
3,721,761 + ECD_03536 0.22 -0.1
3,721,761 + ECD_03536 0.22 +1.8
3,721,762 - ECD_03536 0.22 -0.4
3,721,762 - ECD_03536 0.22 -0.4
3,721,762 - ECD_03536 0.22 +1.4
3,721,762 - ECD_03536 0.22 -1.5
3,721,762 - ECD_03536 0.22 -0.5
3,721,826 - ECD_03536 0.27 +1.6
3,721,829 - ECD_03536 0.28 +0.7
3,721,845 + ECD_03536 0.29 +0.2
3,721,845 + ECD_03536 0.29 +0.8
3,721,846 - ECD_03536 0.29 -0.9
3,721,889 + ECD_03536 0.33 +1.2
3,721,905 - ECD_03536 0.34 -1.2
3,721,962 - ECD_03536 0.39 +0.4
3,721,962 - ECD_03536 0.39 -2.7
3,721,962 - ECD_03536 0.39 +0.1
3,722,039 - ECD_03536 0.46 +0.2
3,722,060 + ECD_03536 0.48 -0.4
3,722,073 + ECD_03536 0.49 -2.1
3,722,073 + ECD_03536 0.49 +0.8
3,722,074 - ECD_03536 0.49 -3.2
3,722,074 - ECD_03536 0.49 -2.8
3,722,075 + ECD_03536 0.49 +0.6
3,722,075 + ECD_03536 0.49 +0.5
3,722,075 + ECD_03536 0.49 -2.0
3,722,076 - ECD_03536 0.50 +0.8
3,722,098 - ECD_03536 0.51 -2.6
3,722,142 + ECD_03536 0.55 +1.8
3,722,148 + ECD_03536 0.56 +0.8
3,722,149 - ECD_03536 0.56 -1.2
3,722,149 - ECD_03536 0.56 -0.6
3,722,153 + ECD_03536 0.56 +1.8
3,722,153 + ECD_03536 0.56 -0.9
3,722,153 + ECD_03536 0.56 +1.2
3,722,154 - ECD_03536 0.56 -1.0
3,722,154 - ECD_03536 0.56 +0.9
3,722,154 - ECD_03536 0.56 +0.3
3,722,231 + ECD_03536 0.63 +0.2
3,722,232 - ECD_03536 0.63 +0.7
3,722,256 + ECD_03536 0.66 -2.0
3,722,257 - ECD_03536 0.66 +1.0
3,722,258 + ECD_03536 0.66 +0.3
3,722,258 + ECD_03536 0.66 +2.2
3,722,259 - ECD_03536 0.66 -0.5
3,722,288 - ECD_03536 0.68 +0.9
3,722,289 + ECD_03536 0.68 -0.7
3,722,289 + ECD_03536 0.68 -2.0
3,722,424 - ECD_03536 0.80 +1.6
3,722,430 + ECD_03536 0.81 +0.4
3,722,513 + ECD_03536 0.88 +0.0
3,722,524 + ECD_03536 0.89 -2.8

Or see this region's nucleotide sequence