Strain Fitness in Escherichia coli BL21 around ECD_03391

Experiment: P2_phage_0.5625_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03390 and ECD_03391 are separated by 29 nucleotidesECD_03391 and ECD_03392 overlap by 4 nucleotidesECD_03392 and ECD_03393 are separated by 10 nucleotides ECD_03390: ECD_03390 - putative transporter, at 3,562,717 to 3,563,988 _03390 ECD_03391: ECD_03391 - dipeptide/heme ABC transporter ATPase, at 3,564,018 to 3,565,022 _03391 ECD_03392: ECD_03392 - dipeptide/heme ABC transporter ATPase, at 3,565,019 to 3,566,002 _03392 ECD_03393: ECD_03393 - dipeptide/heme ABC transporter permease, at 3,566,013 to 3,566,915 _03393 Position (kb) 3564 3565 3566Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3563.137 kb on - strand, within ECD_03390at 3563.189 kb on + strand, within ECD_03390at 3563.228 kb on + strand, within ECD_03390at 3563.286 kb on - strand, within ECD_03390at 3563.332 kb on - strand, within ECD_03390at 3563.360 kb on + strand, within ECD_03390at 3563.361 kb on - strand, within ECD_03390at 3563.365 kb on - strand, within ECD_03390at 3563.373 kb on - strand, within ECD_03390at 3563.373 kb on - strand, within ECD_03390at 3563.376 kb on + strand, within ECD_03390at 3563.388 kb on + strand, within ECD_03390at 3563.395 kb on + strand, within ECD_03390at 3563.420 kb on + strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.461 kb on + strand, within ECD_03390at 3563.462 kb on - strand, within ECD_03390at 3563.462 kb on - strand, within ECD_03390at 3563.462 kb on - strand, within ECD_03390at 3563.462 kb on - strand, within ECD_03390at 3563.463 kb on + strand, within ECD_03390at 3563.464 kb on - strand, within ECD_03390at 3563.505 kb on + strand, within ECD_03390at 3563.554 kb on - strand, within ECD_03390at 3563.595 kb on + strand, within ECD_03390at 3563.595 kb on + strand, within ECD_03390at 3563.625 kb on + strand, within ECD_03390at 3563.626 kb on - strand, within ECD_03390at 3563.626 kb on - strand, within ECD_03390at 3563.626 kb on - strand, within ECD_03390at 3563.660 kb on - strand, within ECD_03390at 3563.660 kb on - strand, within ECD_03390at 3563.716 kb on - strand, within ECD_03390at 3563.778 kb on + strand, within ECD_03390at 3563.778 kb on + strand, within ECD_03390at 3563.778 kb on + strand, within ECD_03390at 3563.843 kb on + strand, within ECD_03390at 3563.844 kb on - strand, within ECD_03390at 3563.845 kb on + strand, within ECD_03390at 3563.845 kb on + strand, within ECD_03390at 3563.845 kb on + strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.851 kb on - strand, within ECD_03390at 3563.851 kb on - strand, within ECD_03390at 3563.884 kb on + strandat 3563.884 kb on + strandat 3563.941 kb on + strandat 3563.941 kb on + strandat 3563.954 kb on + strandat 3563.955 kb on - strandat 3563.986 kb on + strandat 3563.987 kb on - strandat 3564.084 kb on + strandat 3564.084 kb on + strandat 3564.084 kb on + strandat 3564.084 kb on + strandat 3564.085 kb on - strandat 3564.085 kb on - strandat 3564.085 kb on - strandat 3564.174 kb on + strand, within ECD_03391at 3564.240 kb on + strand, within ECD_03391at 3564.316 kb on + strand, within ECD_03391at 3564.317 kb on - strand, within ECD_03391at 3564.317 kb on - strand, within ECD_03391at 3564.371 kb on + strand, within ECD_03391at 3564.379 kb on + strand, within ECD_03391at 3564.379 kb on + strand, within ECD_03391at 3564.379 kb on + strand, within ECD_03391at 3564.380 kb on - strand, within ECD_03391at 3564.542 kb on + strand, within ECD_03391at 3564.543 kb on - strand, within ECD_03391at 3564.543 kb on - strand, within ECD_03391at 3564.559 kb on + strand, within ECD_03391at 3564.560 kb on - strand, within ECD_03391at 3564.560 kb on - strand, within ECD_03391at 3564.628 kb on - strand, within ECD_03391at 3564.697 kb on + strand, within ECD_03391at 3564.761 kb on + strand, within ECD_03391at 3564.762 kb on - strand, within ECD_03391at 3564.784 kb on + strand, within ECD_03391at 3564.784 kb on + strand, within ECD_03391at 3564.784 kb on + strand, within ECD_03391at 3564.785 kb on - strand, within ECD_03391at 3564.842 kb on + strand, within ECD_03391at 3564.864 kb on + strand, within ECD_03391at 3564.894 kb on - strand, within ECD_03391at 3564.959 kb on - strandat 3565.022 kb on + strandat 3565.022 kb on + strandat 3565.022 kb on + strandat 3565.023 kb on - strandat 3565.170 kb on + strand, within ECD_03392at 3565.171 kb on - strand, within ECD_03392at 3565.255 kb on + strand, within ECD_03392at 3565.255 kb on + strand, within ECD_03392at 3565.257 kb on + strand, within ECD_03392at 3565.257 kb on + strand, within ECD_03392at 3565.320 kb on + strand, within ECD_03392at 3565.320 kb on + strand, within ECD_03392at 3565.320 kb on + strand, within ECD_03392at 3565.320 kb on + strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.337 kb on - strand, within ECD_03392at 3565.337 kb on - strand, within ECD_03392at 3565.372 kb on + strand, within ECD_03392at 3565.373 kb on - strand, within ECD_03392at 3565.373 kb on - strand, within ECD_03392at 3565.376 kb on + strand, within ECD_03392at 3565.407 kb on - strand, within ECD_03392at 3565.407 kb on - strand, within ECD_03392at 3565.418 kb on + strand, within ECD_03392at 3565.418 kb on + strand, within ECD_03392at 3565.655 kb on - strand, within ECD_03392at 3565.686 kb on + strand, within ECD_03392at 3565.686 kb on + strand, within ECD_03392at 3565.686 kb on + strand, within ECD_03392at 3565.687 kb on - strand, within ECD_03392at 3565.771 kb on + strand, within ECD_03392at 3565.771 kb on + strand, within ECD_03392at 3565.772 kb on - strand, within ECD_03392at 3565.913 kb on + strandat 3565.914 kb on - strandat 3565.914 kb on - strandat 3565.982 kb on - strandat 3565.985 kb on + strandat 3565.986 kb on - strandat 3565.991 kb on + strandat 3565.992 kb on - strandat 3565.994 kb on + strandat 3566.014 kb on + strandat 3566.014 kb on + strandat 3566.014 kb on + strandat 3566.015 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
remove
3,563,137 - ECD_03390 0.33 +2.7
3,563,189 + ECD_03390 0.37 -3.1
3,563,228 + ECD_03390 0.40 +0.8
3,563,286 - ECD_03390 0.45 -0.9
3,563,332 - ECD_03390 0.48 -1.5
3,563,360 + ECD_03390 0.51 +0.6
3,563,361 - ECD_03390 0.51 -1.2
3,563,365 - ECD_03390 0.51 +0.4
3,563,373 - ECD_03390 0.52 -0.5
3,563,373 - ECD_03390 0.52 +0.7
3,563,376 + ECD_03390 0.52 -0.6
3,563,388 + ECD_03390 0.53 -1.1
3,563,395 + ECD_03390 0.53 +0.9
3,563,420 + ECD_03390 0.55 -1.7
3,563,458 - ECD_03390 0.58 -1.9
3,563,458 - ECD_03390 0.58 +0.3
3,563,458 - ECD_03390 0.58 +2.2
3,563,458 - ECD_03390 0.58 -0.1
3,563,458 - ECD_03390 0.58 +1.2
3,563,461 + ECD_03390 0.58 -0.4
3,563,462 - ECD_03390 0.59 +1.2
3,563,462 - ECD_03390 0.59 +2.5
3,563,462 - ECD_03390 0.59 -0.7
3,563,462 - ECD_03390 0.59 -1.3
3,563,463 + ECD_03390 0.59 +0.8
3,563,464 - ECD_03390 0.59 -1.7
3,563,505 + ECD_03390 0.62 -2.4
3,563,554 - ECD_03390 0.66 -3.1
3,563,595 + ECD_03390 0.69 +0.7
3,563,595 + ECD_03390 0.69 +0.1
3,563,625 + ECD_03390 0.71 +1.4
3,563,626 - ECD_03390 0.71 +1.2
3,563,626 - ECD_03390 0.71 -1.6
3,563,626 - ECD_03390 0.71 -1.5
3,563,660 - ECD_03390 0.74 +0.0
3,563,660 - ECD_03390 0.74 -1.9
3,563,716 - ECD_03390 0.79 -0.5
3,563,778 + ECD_03390 0.83 -2.3
3,563,778 + ECD_03390 0.83 -1.3
3,563,778 + ECD_03390 0.83 -0.9
3,563,843 + ECD_03390 0.89 -0.6
3,563,844 - ECD_03390 0.89 +0.9
3,563,845 + ECD_03390 0.89 -0.2
3,563,845 + ECD_03390 0.89 +1.9
3,563,845 + ECD_03390 0.89 -0.0
3,563,846 - ECD_03390 0.89 +0.9
3,563,846 - ECD_03390 0.89 +1.3
3,563,846 - ECD_03390 0.89 -0.5
3,563,846 - ECD_03390 0.89 +1.4
3,563,846 - ECD_03390 0.89 -1.0
3,563,851 - ECD_03390 0.89 +0.1
3,563,851 - ECD_03390 0.89 +1.5
3,563,884 + +0.3
3,563,884 + +0.8
3,563,941 + +0.1
3,563,941 + +0.7
3,563,954 + +0.8
3,563,955 - -0.0
3,563,986 + +0.7
3,563,987 - -3.1
3,564,084 + -0.5
3,564,084 + +0.7
3,564,084 + -1.0
3,564,084 + +0.9
3,564,085 - +1.9
3,564,085 - -0.8
3,564,085 - +1.0
3,564,174 + ECD_03391 0.16 +0.1
3,564,240 + ECD_03391 0.22 -0.6
3,564,316 + ECD_03391 0.30 +0.5
3,564,317 - ECD_03391 0.30 +0.9
3,564,317 - ECD_03391 0.30 +0.3
3,564,371 + ECD_03391 0.35 +1.0
3,564,379 + ECD_03391 0.36 -3.2
3,564,379 + ECD_03391 0.36 -2.6
3,564,379 + ECD_03391 0.36 +0.4
3,564,380 - ECD_03391 0.36 -0.4
3,564,542 + ECD_03391 0.52 +0.3
3,564,543 - ECD_03391 0.52 +0.9
3,564,543 - ECD_03391 0.52 +1.2
3,564,559 + ECD_03391 0.54 -0.1
3,564,560 - ECD_03391 0.54 -1.3
3,564,560 - ECD_03391 0.54 -2.2
3,564,628 - ECD_03391 0.61 -2.1
3,564,697 + ECD_03391 0.68 -2.1
3,564,761 + ECD_03391 0.74 -1.7
3,564,762 - ECD_03391 0.74 +0.4
3,564,784 + ECD_03391 0.76 +0.1
3,564,784 + ECD_03391 0.76 -3.1
3,564,784 + ECD_03391 0.76 +0.5
3,564,785 - ECD_03391 0.76 -0.2
3,564,842 + ECD_03391 0.82 -1.8
3,564,864 + ECD_03391 0.84 +0.2
3,564,894 - ECD_03391 0.87 +0.3
3,564,959 - -0.0
3,565,022 + -0.0
3,565,022 + +0.7
3,565,022 + +1.5
3,565,023 - -1.7
3,565,170 + ECD_03392 0.15 -0.9
3,565,171 - ECD_03392 0.15 +0.7
3,565,255 + ECD_03392 0.24 -2.7
3,565,255 + ECD_03392 0.24 -0.3
3,565,257 + ECD_03392 0.24 -0.7
3,565,257 + ECD_03392 0.24 +0.4
3,565,320 + ECD_03392 0.31 +0.9
3,565,320 + ECD_03392 0.31 -3.3
3,565,320 + ECD_03392 0.31 +1.5
3,565,320 + ECD_03392 0.31 -2.0
3,565,321 - ECD_03392 0.31 +2.4
3,565,321 - ECD_03392 0.31 -2.8
3,565,321 - ECD_03392 0.31 -1.8
3,565,321 - ECD_03392 0.31 -0.8
3,565,321 - ECD_03392 0.31 +0.3
3,565,337 - ECD_03392 0.32 -0.5
3,565,337 - ECD_03392 0.32 +0.3
3,565,372 + ECD_03392 0.36 +0.3
3,565,373 - ECD_03392 0.36 +1.4
3,565,373 - ECD_03392 0.36 +0.5
3,565,376 + ECD_03392 0.36 +1.5
3,565,407 - ECD_03392 0.39 -1.6
3,565,407 - ECD_03392 0.39 +1.5
3,565,418 + ECD_03392 0.41 +0.7
3,565,418 + ECD_03392 0.41 -2.5
3,565,655 - ECD_03392 0.65 -2.1
3,565,686 + ECD_03392 0.68 -0.2
3,565,686 + ECD_03392 0.68 +0.3
3,565,686 + ECD_03392 0.68 +0.7
3,565,687 - ECD_03392 0.68 -0.1
3,565,771 + ECD_03392 0.76 -2.4
3,565,771 + ECD_03392 0.76 -3.1
3,565,772 - ECD_03392 0.77 -0.8
3,565,913 + -2.1
3,565,914 - -0.7
3,565,914 - +1.0
3,565,982 - -2.2
3,565,985 + -2.0
3,565,986 - -2.1
3,565,991 + +0.5
3,565,992 - -1.4
3,565,994 + +1.8
3,566,014 + +1.3
3,566,014 + +0.6
3,566,014 + -0.2
3,566,015 - +3.0

Or see this region's nucleotide sequence