Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03352 and ECD_03353 are separated by 628 nucleotides ECD_03353 and ECD_03354 are separated by 247 nucleotides ECD_03354 and ECD_03355 are separated by 155 nucleotides
ECD_03352: ECD_03352 - arsenate reductase, at 3,512,623 to 3,513,048
_03352
ECD_03353: ECD_03353 - hypothetical protein, at 3,513,677 to 3,514,900
_03353
ECD_03354: ECD_03354 - outer membrane lipoprotein, at 3,515,148 to 3,515,714
_03354
ECD_03355: ECD_03355 - Putative LuxR family repressor for dicarboxylate transport, at 3,515,870 to 3,516,400
_03355
Position (kb)
3513
3514
3515 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3512.803 kb on - strand, within ECD_03352 at 3512.818 kb on + strand, within ECD_03352 at 3512.819 kb on - strand, within ECD_03352 at 3513.156 kb on + strand at 3513.156 kb on + strand at 3513.159 kb on + strand at 3513.159 kb on + strand at 3513.210 kb on + strand at 3513.211 kb on - strand at 3513.259 kb on + strand at 3513.298 kb on - strand at 3513.298 kb on - strand at 3514.610 kb on + strand, within ECD_03353 at 3514.728 kb on - strand, within ECD_03353 at 3514.970 kb on + strand at 3515.288 kb on - strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.359 kb on + strand, within ECD_03354 at 3515.371 kb on + strand, within ECD_03354 at 3515.372 kb on - strand, within ECD_03354 at 3515.385 kb on - strand, within ECD_03354 at 3515.389 kb on - strand, within ECD_03354 at 3515.402 kb on + strand, within ECD_03354 at 3515.416 kb on - strand, within ECD_03354 at 3515.416 kb on - strand, within ECD_03354 at 3515.523 kb on - strand, within ECD_03354 at 3515.528 kb on + strand, within ECD_03354 at 3515.538 kb on + strand, within ECD_03354 at 3515.539 kb on - strand, within ECD_03354 at 3515.540 kb on + strand, within ECD_03354 at 3515.540 kb on + strand, within ECD_03354 at 3515.540 kb on + strand, within ECD_03354 at 3515.558 kb on + strand, within ECD_03354 at 3515.607 kb on + strand, within ECD_03354 at 3515.607 kb on + strand, within ECD_03354 at 3515.607 kb on + strand, within ECD_03354 at 3515.608 kb on - strand, within ECD_03354 at 3515.671 kb on - strand at 3515.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 3,512,803 - ECD_03352 0.42 -0.8 3,512,818 + ECD_03352 0.46 -3.0 3,512,819 - ECD_03352 0.46 -0.8 3,513,156 + +0.4 3,513,156 + +1.0 3,513,159 + +2.0 3,513,159 + -0.4 3,513,210 + +0.5 3,513,211 - -0.5 3,513,259 + -1.9 3,513,298 - -2.1 3,513,298 - +0.6 3,514,610 + ECD_03353 0.76 -3.4 3,514,728 - ECD_03353 0.86 -0.4 3,514,970 + -1.8 3,515,288 - ECD_03354 0.25 -1.8 3,515,289 + ECD_03354 0.25 +1.5 3,515,289 + ECD_03354 0.25 +2.1 3,515,289 + ECD_03354 0.25 -1.3 3,515,289 + ECD_03354 0.25 -3.5 3,515,289 + ECD_03354 0.25 -3.3 3,515,359 + ECD_03354 0.37 -2.4 3,515,371 + ECD_03354 0.39 -0.9 3,515,372 - ECD_03354 0.40 -2.8 3,515,385 - ECD_03354 0.42 +1.5 3,515,389 - ECD_03354 0.43 -1.0 3,515,402 + ECD_03354 0.45 -2.2 3,515,416 - ECD_03354 0.47 -2.1 3,515,416 - ECD_03354 0.47 +1.5 3,515,523 - ECD_03354 0.66 +1.4 3,515,528 + ECD_03354 0.67 +3.5 3,515,538 + ECD_03354 0.69 -0.5 3,515,539 - ECD_03354 0.69 +1.8 3,515,540 + ECD_03354 0.69 +0.8 3,515,540 + ECD_03354 0.69 +0.6 3,515,540 + ECD_03354 0.69 +2.3 3,515,558 + ECD_03354 0.72 -1.1 3,515,607 + ECD_03354 0.81 -3.2 3,515,607 + ECD_03354 0.81 -1.3 3,515,607 + ECD_03354 0.81 -0.2 3,515,608 - ECD_03354 0.81 +0.2 3,515,671 - +0.4 3,515,775 - -0.9
Or see this region's nucleotide sequence