Strain Fitness in Escherichia coli BL21 around ECD_03144

Experiment: P2_phage_0.5625_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03141 and ECD_03142 overlap by 4 nucleotidesECD_03142 and ECD_03143 are separated by 55 nucleotidesECD_03143 and ECD_03144 are separated by 10 nucleotidesECD_03144 and ECD_03145 are separated by 106 nucleotidesECD_03145 and ECD_03146 are separated by 40 nucleotides ECD_03141: ECD_03141 - mechanosensitive channel protein, high conductance, at 3,299,194 to 3,299,604 _03141 ECD_03142: ECD_03142 - alternate ribosome-rescue factor A, at 3,299,601 to 3,299,819 _03142 ECD_03143: ECD_03143 - zntA gene transcriptional activator, at 3,299,875 to 3,300,300 _03143 ECD_03144: ECD_03144 - DUF1992 family protein, at 3,300,311 to 3,300,679 _03144 ECD_03145: ECD_03145 - 50S ribosomal subunit protein L17, at 3,300,786 to 3,301,169 _03145 ECD_03146: ECD_03146 - RNA polymerase, alpha subunit, at 3,301,210 to 3,302,199 _03146 Position (kb) 3300 3301Strain fitness (log2 ratio) -3 -2 -1 0 1at 3299.334 kb on - strand, within ECD_03141at 3299.481 kb on + strand, within ECD_03141at 3299.486 kb on + strand, within ECD_03141at 3299.542 kb on - strand, within ECD_03141at 3299.552 kb on + strand, within ECD_03141at 3299.552 kb on + strand, within ECD_03141at 3299.555 kb on + strand, within ECD_03141at 3299.704 kb on + strand, within ECD_03142at 3299.705 kb on - strand, within ECD_03142at 3299.764 kb on - strand, within ECD_03142at 3299.773 kb on - strand, within ECD_03142at 3299.781 kb on - strand, within ECD_03142at 3299.788 kb on - strand, within ECD_03142at 3299.799 kb on - strandat 3299.837 kb on - strandat 3299.943 kb on + strand, within ECD_03143at 3299.994 kb on + strand, within ECD_03143at 3299.995 kb on - strand, within ECD_03143at 3300.070 kb on - strand, within ECD_03143at 3300.070 kb on - strand, within ECD_03143at 3300.181 kb on - strand, within ECD_03143at 3300.263 kb on - strandat 3300.300 kb on + strandat 3300.300 kb on + strandat 3300.300 kb on + strandat 3300.300 kb on + strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.301 kb on - strandat 3300.305 kb on - strandat 3300.305 kb on - strandat 3300.313 kb on - strandat 3300.513 kb on - strand, within ECD_03144at 3300.645 kb on - strandat 3300.645 kb on - strandat 3300.645 kb on - strandat 3300.645 kb on - strandat 3300.647 kb on - strandat 3300.672 kb on - strandat 3300.672 kb on - strandat 3300.684 kb on - strandat 3300.709 kb on - strandat 3300.720 kb on - strandat 3300.724 kb on - strandat 3300.724 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
remove
3,299,334 - ECD_03141 0.34 -1.5
3,299,481 + ECD_03141 0.70 -0.7
3,299,486 + ECD_03141 0.71 +1.7
3,299,542 - ECD_03141 0.85 -0.3
3,299,552 + ECD_03141 0.87 +1.4
3,299,552 + ECD_03141 0.87 -0.1
3,299,555 + ECD_03141 0.88 +0.8
3,299,704 + ECD_03142 0.47 -0.2
3,299,705 - ECD_03142 0.47 -1.5
3,299,764 - ECD_03142 0.74 -0.5
3,299,773 - ECD_03142 0.79 -2.5
3,299,781 - ECD_03142 0.82 -1.4
3,299,788 - ECD_03142 0.85 -2.6
3,299,799 - -0.7
3,299,837 - +1.0
3,299,943 + ECD_03143 0.16 -1.4
3,299,994 + ECD_03143 0.28 -2.8
3,299,995 - ECD_03143 0.28 +0.1
3,300,070 - ECD_03143 0.46 +1.3
3,300,070 - ECD_03143 0.46 +0.9
3,300,181 - ECD_03143 0.72 -1.5
3,300,263 - -2.0
3,300,300 + +0.1
3,300,300 + +0.3
3,300,300 + -1.5
3,300,300 + +0.5
3,300,301 - +1.1
3,300,301 - -3.2
3,300,301 - +1.3
3,300,301 - +1.7
3,300,301 - -0.7
3,300,301 - -0.9
3,300,301 - -0.9
3,300,301 - -2.0
3,300,301 - -1.4
3,300,301 - -1.1
3,300,301 - -0.9
3,300,305 - -1.9
3,300,305 - -2.0
3,300,313 - -1.1
3,300,513 - ECD_03144 0.55 -2.4
3,300,645 - -1.9
3,300,645 - -3.6
3,300,645 - -0.6
3,300,645 - -2.0
3,300,647 - -1.3
3,300,672 - -2.0
3,300,672 - -2.7
3,300,684 - -1.2
3,300,709 - -0.9
3,300,720 - -3.3
3,300,724 - -0.3
3,300,724 - -2.0

Or see this region's nucleotide sequence