Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02856 and ECD_02857 are separated by 30 nucleotides ECD_02857 and ECD_02858 are separated by 11 nucleotides ECD_02858 and ECD_02859 overlap by 1 nucleotides
ECD_02856: ECD_02856 - hypothetical protein, at 2,995,996 to 2,997,066
_02856
ECD_02857: ECD_02857 - hypothetical protein, at 2,997,097 to 2,997,657
_02857
ECD_02858: ECD_02858 - hypothetical protein, at 2,997,669 to 2,998,493
_02858
ECD_02859: ECD_02859 - putative inner membrane polysaccharide flippase, at 2,998,493 to 2,999,842
_02859
Position (kb)
2997
2998 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2996.154 kb on + strand, within ECD_02856 at 2996.176 kb on + strand, within ECD_02856 at 2996.374 kb on + strand, within ECD_02856 at 2996.374 kb on + strand, within ECD_02856 at 2996.374 kb on + strand, within ECD_02856 at 2996.375 kb on - strand, within ECD_02856 at 2996.375 kb on - strand, within ECD_02856 at 2996.535 kb on + strand, within ECD_02856 at 2996.562 kb on + strand, within ECD_02856 at 2996.562 kb on + strand, within ECD_02856 at 2996.690 kb on + strand, within ECD_02856 at 2996.690 kb on + strand, within ECD_02856 at 2996.708 kb on + strand, within ECD_02856 at 2996.708 kb on + strand, within ECD_02856 at 2996.708 kb on + strand, within ECD_02856 at 2996.708 kb on + strand, within ECD_02856 at 2996.708 kb on + strand, within ECD_02856 at 2996.708 kb on + strand, within ECD_02856 at 2996.708 kb on + strand, within ECD_02856 at 2996.708 kb on + strand, within ECD_02856 at 2996.709 kb on - strand, within ECD_02856 at 2996.709 kb on - strand, within ECD_02856 at 2996.709 kb on - strand, within ECD_02856 at 2996.709 kb on - strand, within ECD_02856 at 2996.709 kb on - strand, within ECD_02856 at 2996.754 kb on - strand, within ECD_02856 at 2996.825 kb on + strand, within ECD_02856 at 2996.825 kb on + strand, within ECD_02856 at 2996.825 kb on + strand, within ECD_02856 at 2996.826 kb on - strand, within ECD_02856 at 2996.826 kb on - strand, within ECD_02856 at 2996.858 kb on + strand, within ECD_02856 at 2996.859 kb on - strand, within ECD_02856 at 2997.033 kb on + strand at 2997.047 kb on + strand at 2997.048 kb on - strand at 2997.048 kb on - strand at 2997.139 kb on + strand at 2997.139 kb on + strand at 2997.561 kb on - strand, within ECD_02857 at 2997.639 kb on + strand at 2997.671 kb on - strand at 2997.742 kb on + strand at 2997.743 kb on - strand at 2997.743 kb on - strand at 2997.789 kb on - strand, within ECD_02858 at 2997.829 kb on - strand, within ECD_02858 at 2997.867 kb on + strand, within ECD_02858 at 2998.002 kb on + strand, within ECD_02858 at 2998.011 kb on + strand, within ECD_02858 at 2998.027 kb on - strand, within ECD_02858 at 2998.222 kb on + strand, within ECD_02858 at 2998.222 kb on + strand, within ECD_02858 at 2998.223 kb on - strand, within ECD_02858 at 2998.238 kb on - strand, within ECD_02858 at 2998.355 kb on - strand, within ECD_02858 at 2998.379 kb on + strand, within ECD_02858 at 2998.380 kb on - strand, within ECD_02858 at 2998.387 kb on - strand, within ECD_02858 at 2998.519 kb on - strand at 2998.519 kb on - strand at 2998.550 kb on + strand at 2998.562 kb on + strand at 2998.599 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 2,996,154 + ECD_02856 0.15 -0.6 2,996,176 + ECD_02856 0.17 +1.5 2,996,374 + ECD_02856 0.35 -1.4 2,996,374 + ECD_02856 0.35 +0.9 2,996,374 + ECD_02856 0.35 +0.7 2,996,375 - ECD_02856 0.35 -0.9 2,996,375 - ECD_02856 0.35 +0.1 2,996,535 + ECD_02856 0.50 +1.6 2,996,562 + ECD_02856 0.53 -0.9 2,996,562 + ECD_02856 0.53 +1.4 2,996,690 + ECD_02856 0.65 -0.9 2,996,690 + ECD_02856 0.65 +0.2 2,996,708 + ECD_02856 0.66 -2.3 2,996,708 + ECD_02856 0.66 +0.5 2,996,708 + ECD_02856 0.66 +2.0 2,996,708 + ECD_02856 0.66 -0.7 2,996,708 + ECD_02856 0.66 -1.1 2,996,708 + ECD_02856 0.66 -1.8 2,996,708 + ECD_02856 0.66 +0.1 2,996,708 + ECD_02856 0.66 -0.4 2,996,709 - ECD_02856 0.67 -1.9 2,996,709 - ECD_02856 0.67 -1.1 2,996,709 - ECD_02856 0.67 +1.7 2,996,709 - ECD_02856 0.67 -1.2 2,996,709 - ECD_02856 0.67 -0.7 2,996,754 - ECD_02856 0.71 -0.0 2,996,825 + ECD_02856 0.77 -1.8 2,996,825 + ECD_02856 0.77 +2.4 2,996,825 + ECD_02856 0.77 -0.8 2,996,826 - ECD_02856 0.77 +1.9 2,996,826 - ECD_02856 0.77 -1.4 2,996,858 + ECD_02856 0.80 +1.9 2,996,859 - ECD_02856 0.81 +0.4 2,997,033 + -0.2 2,997,047 + +0.7 2,997,048 - +1.3 2,997,048 - -2.5 2,997,139 + +3.4 2,997,139 + +1.7 2,997,561 - ECD_02857 0.83 -2.5 2,997,639 + +1.1 2,997,671 - -2.6 2,997,742 + -1.4 2,997,743 - +0.6 2,997,743 - -0.2 2,997,789 - ECD_02858 0.15 +2.2 2,997,829 - ECD_02858 0.19 +0.6 2,997,867 + ECD_02858 0.24 -2.4 2,998,002 + ECD_02858 0.40 -3.6 2,998,011 + ECD_02858 0.41 -1.6 2,998,027 - ECD_02858 0.43 -1.0 2,998,222 + ECD_02858 0.67 -2.1 2,998,222 + ECD_02858 0.67 -1.2 2,998,223 - ECD_02858 0.67 -2.8 2,998,238 - ECD_02858 0.69 +0.6 2,998,355 - ECD_02858 0.83 +2.0 2,998,379 + ECD_02858 0.86 -1.2 2,998,380 - ECD_02858 0.86 -1.0 2,998,387 - ECD_02858 0.87 -0.4 2,998,519 - +0.3 2,998,519 - +2.2 2,998,550 + -2.0 2,998,562 + -0.3 2,998,599 + +1.0
Or see this region's nucleotide sequence