Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02551 and ECD_02552 are separated by 255 nucleotides ECD_02552 and ECD_02553 overlap by 4 nucleotides ECD_02553 and ECD_02554 are separated by 10 nucleotides ECD_02554 and ECD_02555 are separated by 3 nucleotides
ECD_02551: ECD_02551 - membrane-bound lytic murein transglycosylase B, at 2,664,457 to 2,665,542
_02551
ECD_02552: ECD_02552 - glucitol/sorbitol-specific enzyme IIC component of PTS, at 2,665,798 to 2,666,361
_02552
ECD_02553: ECD_02553 - glucitol/sorbitol-specific enzyme IIB component of PTS, at 2,666,358 to 2,667,317
_02553
ECD_02554: ECD_02554 - glucitol/sorbitol-specific enzyme IIA component of PTS, at 2,667,328 to 2,667,699
_02554
ECD_02555: ECD_02555 - sorbitol-6-phosphate dehydrogenase, at 2,667,703 to 2,668,482
_02555
Position (kb)
2666
2667
2668 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2665.375 kb on - strand, within ECD_02551 at 2665.375 kb on - strand, within ECD_02551 at 2665.377 kb on + strand, within ECD_02551 at 2665.377 kb on + strand, within ECD_02551 at 2665.467 kb on + strand at 2665.468 kb on - strand at 2665.486 kb on - strand at 2665.522 kb on + strand at 2665.522 kb on + strand at 2665.522 kb on + strand at 2665.522 kb on + strand at 2665.522 kb on + strand at 2665.522 kb on + strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.523 kb on - strand at 2665.526 kb on + strand at 2665.526 kb on + strand at 2665.526 kb on + strand at 2665.527 kb on - strand at 2665.527 kb on - strand at 2665.527 kb on - strand at 2665.555 kb on + strand at 2665.578 kb on + strand at 2665.578 kb on + strand at 2665.579 kb on - strand at 2665.579 kb on - strand at 2665.583 kb on + strand at 2665.583 kb on + strand at 2665.584 kb on - strand at 2665.640 kb on + strand at 2665.641 kb on - strand at 2665.641 kb on - strand at 2665.641 kb on - strand at 2665.641 kb on - strand at 2665.641 kb on - strand at 2665.802 kb on + strand at 2665.802 kb on + strand at 2665.803 kb on - strand at 2665.803 kb on - strand at 2665.812 kb on + strand at 2665.902 kb on + strand, within ECD_02552 at 2665.932 kb on + strand, within ECD_02552 at 2665.932 kb on + strand, within ECD_02552 at 2665.953 kb on + strand, within ECD_02552 at 2665.953 kb on + strand, within ECD_02552 at 2665.953 kb on + strand, within ECD_02552 at 2665.954 kb on - strand, within ECD_02552 at 2665.954 kb on - strand, within ECD_02552 at 2665.999 kb on + strand, within ECD_02552 at 2666.003 kb on + strand, within ECD_02552 at 2666.003 kb on + strand, within ECD_02552 at 2666.003 kb on + strand, within ECD_02552 at 2666.003 kb on + strand, within ECD_02552 at 2666.003 kb on + strand, within ECD_02552 at 2666.003 kb on + strand, within ECD_02552 at 2666.003 kb on + strand, within ECD_02552 at 2666.003 kb on + strand, within ECD_02552 at 2666.003 kb on + strand, within ECD_02552 at 2666.004 kb on - strand, within ECD_02552 at 2666.004 kb on - strand, within ECD_02552 at 2666.004 kb on - strand, within ECD_02552 at 2666.004 kb on - strand, within ECD_02552 at 2666.004 kb on - strand, within ECD_02552 at 2666.004 kb on - strand, within ECD_02552 at 2666.052 kb on - strand, within ECD_02552 at 2666.052 kb on - strand, within ECD_02552 at 2666.052 kb on - strand, within ECD_02552 at 2666.052 kb on - strand, within ECD_02552 at 2666.067 kb on + strand, within ECD_02552 at 2666.080 kb on + strand, within ECD_02552 at 2666.080 kb on + strand, within ECD_02552 at 2666.081 kb on - strand, within ECD_02552 at 2666.081 kb on - strand, within ECD_02552 at 2666.081 kb on - strand, within ECD_02552 at 2666.081 kb on - strand, within ECD_02552 at 2666.092 kb on + strand, within ECD_02552 at 2666.092 kb on + strand, within ECD_02552 at 2666.092 kb on + strand, within ECD_02552 at 2666.092 kb on + strand, within ECD_02552 at 2666.095 kb on + strand, within ECD_02552 at 2666.110 kb on + strand, within ECD_02552 at 2666.110 kb on + strand, within ECD_02552 at 2666.110 kb on + strand, within ECD_02552 at 2666.110 kb on + strand, within ECD_02552 at 2666.111 kb on - strand, within ECD_02552 at 2666.112 kb on + strand, within ECD_02552 at 2666.112 kb on + strand, within ECD_02552 at 2666.112 kb on + strand, within ECD_02552 at 2666.112 kb on + strand, within ECD_02552 at 2666.112 kb on + strand, within ECD_02552 at 2666.112 kb on + strand, within ECD_02552 at 2666.112 kb on + strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.113 kb on - strand, within ECD_02552 at 2666.145 kb on + strand, within ECD_02552 at 2666.146 kb on - strand, within ECD_02552 at 2666.170 kb on + strand, within ECD_02552 at 2666.170 kb on + strand, within ECD_02552 at 2666.170 kb on + strand, within ECD_02552 at 2666.233 kb on + strand, within ECD_02552 at 2666.233 kb on + strand, within ECD_02552 at 2666.233 kb on + strand, within ECD_02552 at 2666.233 kb on + strand, within ECD_02552 at 2666.233 kb on + strand, within ECD_02552 at 2666.234 kb on - strand, within ECD_02552 at 2666.234 kb on - strand, within ECD_02552 at 2666.234 kb on - strand, within ECD_02552 at 2666.234 kb on - strand, within ECD_02552 at 2666.366 kb on + strand at 2666.442 kb on + strand at 2666.444 kb on + strand at 2666.444 kb on + strand at 2666.444 kb on + strand at 2666.445 kb on - strand at 2666.492 kb on + strand, within ECD_02553 at 2666.492 kb on + strand, within ECD_02553 at 2666.508 kb on - strand, within ECD_02553 at 2666.519 kb on + strand, within ECD_02553 at 2666.520 kb on - strand, within ECD_02553 at 2666.520 kb on - strand, within ECD_02553 at 2666.581 kb on + strand, within ECD_02553 at 2666.582 kb on - strand, within ECD_02553 at 2666.582 kb on - strand, within ECD_02553 at 2666.610 kb on - strand, within ECD_02553 at 2666.621 kb on + strand, within ECD_02553 at 2666.621 kb on + strand, within ECD_02553 at 2666.621 kb on + strand, within ECD_02553 at 2666.622 kb on - strand, within ECD_02553 at 2666.675 kb on + strand, within ECD_02553 at 2666.675 kb on + strand, within ECD_02553 at 2666.675 kb on + strand, within ECD_02553 at 2666.676 kb on - strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.679 kb on + strand, within ECD_02553 at 2666.680 kb on - strand, within ECD_02553 at 2666.680 kb on - strand, within ECD_02553 at 2666.680 kb on - strand, within ECD_02553 at 2666.680 kb on - strand, within ECD_02553 at 2666.680 kb on - strand, within ECD_02553 at 2666.692 kb on + strand, within ECD_02553 at 2666.713 kb on + strand, within ECD_02553 at 2666.713 kb on + strand, within ECD_02553 at 2666.713 kb on + strand, within ECD_02553 at 2666.713 kb on + strand, within ECD_02553 at 2666.713 kb on + strand, within ECD_02553 at 2666.714 kb on - strand, within ECD_02553 at 2666.714 kb on - strand, within ECD_02553 at 2666.716 kb on + strand, within ECD_02553 at 2666.716 kb on + strand, within ECD_02553 at 2666.757 kb on + strand, within ECD_02553 at 2666.758 kb on - strand, within ECD_02553 at 2666.758 kb on - strand, within ECD_02553 at 2666.876 kb on - strand, within ECD_02553 at 2666.876 kb on - strand, within ECD_02553 at 2666.876 kb on - strand, within ECD_02553 at 2666.879 kb on - strand, within ECD_02553 at 2666.897 kb on + strand, within ECD_02553 at 2666.930 kb on + strand, within ECD_02553 at 2666.931 kb on - strand, within ECD_02553 at 2667.062 kb on + strand, within ECD_02553 at 2667.063 kb on - strand, within ECD_02553 at 2667.083 kb on - strand, within ECD_02553 at 2667.241 kb on + strand at 2667.241 kb on + strand at 2667.242 kb on - strand at 2667.277 kb on + strand at 2667.277 kb on + strand at 2667.306 kb on - strand at 2667.306 kb on - strand at 2667.306 kb on - strand at 2667.309 kb on + strand at 2667.309 kb on + strand at 2667.310 kb on - strand at 2667.310 kb on - strand at 2667.310 kb on - strand at 2667.310 kb on - strand at 2667.310 kb on - strand at 2667.310 kb on - strand at 2667.337 kb on - strand at 2667.337 kb on - strand at 2667.337 kb on - strand at 2667.442 kb on + strand, within ECD_02554 at 2667.442 kb on + strand, within ECD_02554 at 2667.442 kb on + strand, within ECD_02554 at 2667.442 kb on + strand, within ECD_02554 at 2667.442 kb on + strand, within ECD_02554 at 2667.442 kb on + strand, within ECD_02554 at 2667.443 kb on - strand, within ECD_02554 at 2667.443 kb on - strand, within ECD_02554 at 2667.443 kb on - strand, within ECD_02554 at 2667.744 kb on - strand at 2667.841 kb on - strand, within ECD_02555 at 2667.850 kb on + strand, within ECD_02555 at 2667.851 kb on - strand, within ECD_02555 at 2667.868 kb on + strand, within ECD_02555 at 2667.868 kb on + strand, within ECD_02555 at 2667.869 kb on - strand, within ECD_02555 at 2667.962 kb on - strand, within ECD_02555 at 2667.962 kb on - strand, within ECD_02555 at 2667.962 kb on - strand, within ECD_02555 at 2667.962 kb on - strand, within ECD_02555 at 2668.048 kb on + strand, within ECD_02555 at 2668.048 kb on + strand, within ECD_02555 at 2668.225 kb on + strand, within ECD_02555 at 2668.233 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555 at 2668.300 kb on + strand, within ECD_02555
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 2,665,375 - ECD_02551 0.85 +1.0 2,665,375 - ECD_02551 0.85 +0.4 2,665,377 + ECD_02551 0.85 +3.1 2,665,377 + ECD_02551 0.85 +0.4 2,665,467 + -0.1 2,665,468 - -0.1 2,665,486 - +1.2 2,665,522 + +0.7 2,665,522 + +1.9 2,665,522 + -1.0 2,665,522 + -2.9 2,665,522 + +2.1 2,665,522 + -0.3 2,665,523 - -0.4 2,665,523 - -1.3 2,665,523 - +0.6 2,665,523 - -0.9 2,665,523 - -1.6 2,665,523 - +1.2 2,665,523 - -1.3 2,665,523 - +2.4 2,665,523 - -1.3 2,665,523 - +1.0 2,665,523 - -2.9 2,665,526 + -1.0 2,665,526 + -0.0 2,665,526 + +0.9 2,665,527 - -0.0 2,665,527 - -1.3 2,665,527 - +0.7 2,665,555 + +0.9 2,665,578 + -2.3 2,665,578 + -1.1 2,665,579 - +0.9 2,665,579 - -1.0 2,665,583 + -1.9 2,665,583 + -1.3 2,665,584 - -0.1 2,665,640 + -0.8 2,665,641 - +3.3 2,665,641 - -0.6 2,665,641 - -2.7 2,665,641 - -2.1 2,665,641 - -2.7 2,665,802 + -1.1 2,665,802 + +0.4 2,665,803 - -2.4 2,665,803 - -1.8 2,665,812 + -2.1 2,665,902 + ECD_02552 0.18 +2.8 2,665,932 + ECD_02552 0.24 -0.9 2,665,932 + ECD_02552 0.24 -1.2 2,665,953 + ECD_02552 0.27 +0.0 2,665,953 + ECD_02552 0.27 -1.0 2,665,953 + ECD_02552 0.27 -1.8 2,665,954 - ECD_02552 0.28 +1.6 2,665,954 - ECD_02552 0.28 -1.3 2,665,999 + ECD_02552 0.36 -0.3 2,666,003 + ECD_02552 0.36 -1.1 2,666,003 + ECD_02552 0.36 -0.0 2,666,003 + ECD_02552 0.36 -3.0 2,666,003 + ECD_02552 0.36 +0.1 2,666,003 + ECD_02552 0.36 -1.6 2,666,003 + ECD_02552 0.36 +1.3 2,666,003 + ECD_02552 0.36 -2.8 2,666,003 + ECD_02552 0.36 +1.3 2,666,003 + ECD_02552 0.36 +1.4 2,666,004 - ECD_02552 0.37 +2.2 2,666,004 - ECD_02552 0.37 +1.5 2,666,004 - ECD_02552 0.37 -0.0 2,666,004 - ECD_02552 0.37 +0.4 2,666,004 - ECD_02552 0.37 -0.4 2,666,004 - ECD_02552 0.37 -1.8 2,666,052 - ECD_02552 0.45 +0.7 2,666,052 - ECD_02552 0.45 -1.9 2,666,052 - ECD_02552 0.45 -0.2 2,666,052 - ECD_02552 0.45 -1.5 2,666,067 + ECD_02552 0.48 +1.5 2,666,080 + ECD_02552 0.50 +2.1 2,666,080 + ECD_02552 0.50 +1.7 2,666,081 - ECD_02552 0.50 -2.3 2,666,081 - ECD_02552 0.50 -1.1 2,666,081 - ECD_02552 0.50 +1.3 2,666,081 - ECD_02552 0.50 +3.3 2,666,092 + ECD_02552 0.52 +1.7 2,666,092 + ECD_02552 0.52 +0.2 2,666,092 + ECD_02552 0.52 +2.9 2,666,092 + ECD_02552 0.52 -2.0 2,666,095 + ECD_02552 0.53 +0.2 2,666,110 + ECD_02552 0.55 -1.5 2,666,110 + ECD_02552 0.55 -1.4 2,666,110 + ECD_02552 0.55 -0.3 2,666,110 + ECD_02552 0.55 +2.6 2,666,111 - ECD_02552 0.55 +1.2 2,666,112 + ECD_02552 0.56 +0.3 2,666,112 + ECD_02552 0.56 +0.8 2,666,112 + ECD_02552 0.56 -0.7 2,666,112 + ECD_02552 0.56 -1.0 2,666,112 + ECD_02552 0.56 -0.7 2,666,112 + ECD_02552 0.56 -0.9 2,666,112 + ECD_02552 0.56 +1.0 2,666,113 - ECD_02552 0.56 -1.2 2,666,113 - ECD_02552 0.56 -0.2 2,666,113 - ECD_02552 0.56 +1.1 2,666,113 - ECD_02552 0.56 -0.7 2,666,113 - ECD_02552 0.56 +0.3 2,666,113 - ECD_02552 0.56 -2.1 2,666,113 - ECD_02552 0.56 -2.3 2,666,113 - ECD_02552 0.56 -2.7 2,666,113 - ECD_02552 0.56 -2.2 2,666,113 - ECD_02552 0.56 +2.8 2,666,145 + ECD_02552 0.62 -0.7 2,666,146 - ECD_02552 0.62 -2.1 2,666,170 + ECD_02552 0.66 +0.4 2,666,170 + ECD_02552 0.66 +4.1 2,666,170 + ECD_02552 0.66 +0.4 2,666,233 + ECD_02552 0.77 -2.2 2,666,233 + ECD_02552 0.77 -0.5 2,666,233 + ECD_02552 0.77 -0.3 2,666,233 + ECD_02552 0.77 +0.8 2,666,233 + ECD_02552 0.77 +1.8 2,666,234 - ECD_02552 0.77 +1.7 2,666,234 - ECD_02552 0.77 +0.7 2,666,234 - ECD_02552 0.77 -1.5 2,666,234 - ECD_02552 0.77 +0.9 2,666,366 + -0.7 2,666,442 + +0.4 2,666,444 + -1.0 2,666,444 + +2.2 2,666,444 + +2.9 2,666,445 - -0.3 2,666,492 + ECD_02553 0.14 -2.4 2,666,492 + ECD_02553 0.14 +0.2 2,666,508 - ECD_02553 0.16 -1.6 2,666,519 + ECD_02553 0.17 -1.5 2,666,520 - ECD_02553 0.17 +0.9 2,666,520 - ECD_02553 0.17 -0.3 2,666,581 + ECD_02553 0.23 +0.0 2,666,582 - ECD_02553 0.23 -0.4 2,666,582 - ECD_02553 0.23 +1.1 2,666,610 - ECD_02553 0.26 -0.5 2,666,621 + ECD_02553 0.27 +2.2 2,666,621 + ECD_02553 0.27 -2.9 2,666,621 + ECD_02553 0.27 -2.9 2,666,622 - ECD_02553 0.28 +0.8 2,666,675 + ECD_02553 0.33 -0.9 2,666,675 + ECD_02553 0.33 -0.3 2,666,675 + ECD_02553 0.33 -0.4 2,666,676 - ECD_02553 0.33 -1.4 2,666,679 + ECD_02553 0.33 +4.4 2,666,679 + ECD_02553 0.33 +1.0 2,666,679 + ECD_02553 0.33 +1.4 2,666,679 + ECD_02553 0.33 -0.2 2,666,679 + ECD_02553 0.33 -0.1 2,666,679 + ECD_02553 0.33 -1.9 2,666,679 + ECD_02553 0.33 -0.9 2,666,679 + ECD_02553 0.33 -1.1 2,666,679 + ECD_02553 0.33 +0.7 2,666,679 + ECD_02553 0.33 +0.7 2,666,680 - ECD_02553 0.34 -2.6 2,666,680 - ECD_02553 0.34 -0.5 2,666,680 - ECD_02553 0.34 -2.2 2,666,680 - ECD_02553 0.34 -2.8 2,666,680 - ECD_02553 0.34 -2.4 2,666,692 + ECD_02553 0.35 +0.6 2,666,713 + ECD_02553 0.37 -1.9 2,666,713 + ECD_02553 0.37 -0.9 2,666,713 + ECD_02553 0.37 -1.0 2,666,713 + ECD_02553 0.37 -1.2 2,666,713 + ECD_02553 0.37 +1.3 2,666,714 - ECD_02553 0.37 -3.5 2,666,714 - ECD_02553 0.37 -2.6 2,666,716 + ECD_02553 0.37 -1.1 2,666,716 + ECD_02553 0.37 -1.0 2,666,757 + ECD_02553 0.42 -0.5 2,666,758 - ECD_02553 0.42 +2.9 2,666,758 - ECD_02553 0.42 -0.7 2,666,876 - ECD_02553 0.54 -2.1 2,666,876 - ECD_02553 0.54 +0.8 2,666,876 - ECD_02553 0.54 -0.5 2,666,879 - ECD_02553 0.54 -1.8 2,666,897 + ECD_02553 0.56 +1.1 2,666,930 + ECD_02553 0.60 +0.7 2,666,931 - ECD_02553 0.60 +1.7 2,667,062 + ECD_02553 0.73 +0.1 2,667,063 - ECD_02553 0.73 -0.5 2,667,083 - ECD_02553 0.76 -1.2 2,667,241 + +0.7 2,667,241 + -1.6 2,667,242 - +1.4 2,667,277 + +0.1 2,667,277 + -0.4 2,667,306 - +2.7 2,667,306 - +0.6 2,667,306 - +1.0 2,667,309 + -0.5 2,667,309 + +2.4 2,667,310 - -1.9 2,667,310 - -2.0 2,667,310 - +1.2 2,667,310 - -2.9 2,667,310 - -1.4 2,667,310 - -1.5 2,667,337 - -0.9 2,667,337 - +3.1 2,667,337 - -2.6 2,667,442 + ECD_02554 0.31 -1.4 2,667,442 + ECD_02554 0.31 -1.0 2,667,442 + ECD_02554 0.31 -3.1 2,667,442 + ECD_02554 0.31 -1.0 2,667,442 + ECD_02554 0.31 -1.3 2,667,442 + ECD_02554 0.31 +0.7 2,667,443 - ECD_02554 0.31 +0.2 2,667,443 - ECD_02554 0.31 -0.9 2,667,443 - ECD_02554 0.31 +0.8 2,667,744 - -2.4 2,667,841 - ECD_02555 0.18 -0.7 2,667,850 + ECD_02555 0.19 -0.8 2,667,851 - ECD_02555 0.19 -1.2 2,667,868 + ECD_02555 0.21 -1.9 2,667,868 + ECD_02555 0.21 +0.3 2,667,869 - ECD_02555 0.21 -0.2 2,667,962 - ECD_02555 0.33 +0.6 2,667,962 - ECD_02555 0.33 -1.1 2,667,962 - ECD_02555 0.33 -2.0 2,667,962 - ECD_02555 0.33 -2.0 2,668,048 + ECD_02555 0.44 +2.1 2,668,048 + ECD_02555 0.44 +0.8 2,668,225 + ECD_02555 0.67 +0.3 2,668,233 + ECD_02555 0.68 +2.1 2,668,300 + ECD_02555 0.77 +0.2 2,668,300 + ECD_02555 0.77 +3.7 2,668,300 + ECD_02555 0.77 -2.4 2,668,300 + ECD_02555 0.77 +0.9 2,668,300 + ECD_02555 0.77 -1.3 2,668,300 + ECD_02555 0.77 -1.9
Or see this region's nucleotide sequence