Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02399 and ECD_02400 are separated by 68 nucleotides ECD_02400 and ECD_02401 are separated by 161 nucleotides
ECD_02399: ECD_02399 - GMP synthetase (glutamine aminotransferase), at 2,495,438 to 2,497,015
_02399
ECD_02400: ECD_02400 - IMP dehydrogenase, at 2,497,084 to 2,498,550
_02400
ECD_02401: ECD_02401 - exonuclease VII, large subunit, at 2,498,712 to 2,500,082
_02401
Position (kb)
2497
2498
2499 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2496.167 kb on - strand, within ECD_02399 at 2496.332 kb on - strand, within ECD_02399 at 2496.490 kb on - strand, within ECD_02399 at 2496.490 kb on - strand, within ECD_02399 at 2496.669 kb on - strand, within ECD_02399 at 2496.796 kb on - strand, within ECD_02399 at 2496.830 kb on - strand, within ECD_02399 at 2497.050 kb on - strand at 2497.120 kb on - strand at 2497.207 kb on - strand at 2497.207 kb on - strand at 2497.228 kb on - strand at 2497.472 kb on - strand, within ECD_02400 at 2497.597 kb on - strand, within ECD_02400 at 2497.636 kb on - strand, within ECD_02400 at 2497.642 kb on - strand, within ECD_02400 at 2497.753 kb on - strand, within ECD_02400 at 2497.753 kb on - strand, within ECD_02400 at 2497.781 kb on - strand, within ECD_02400 at 2498.096 kb on + strand, within ECD_02400 at 2498.096 kb on + strand, within ECD_02400 at 2498.097 kb on - strand, within ECD_02400 at 2498.097 kb on - strand, within ECD_02400 at 2498.097 kb on - strand, within ECD_02400 at 2498.546 kb on - strand at 2498.598 kb on + strand at 2498.716 kb on + strand at 2499.169 kb on + strand, within ECD_02401 at 2499.169 kb on + strand, within ECD_02401 at 2499.176 kb on + strand, within ECD_02401 at 2499.310 kb on + strand, within ECD_02401
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 2,496,167 - ECD_02399 0.46 +0.2 2,496,332 - ECD_02399 0.57 -1.1 2,496,490 - ECD_02399 0.67 -0.3 2,496,490 - ECD_02399 0.67 +1.2 2,496,669 - ECD_02399 0.78 -1.4 2,496,796 - ECD_02399 0.86 +0.2 2,496,830 - ECD_02399 0.88 -1.2 2,497,050 - -3.1 2,497,120 - -1.2 2,497,207 - -2.1 2,497,207 - -3.4 2,497,228 - -2.0 2,497,472 - ECD_02400 0.26 -3.2 2,497,597 - ECD_02400 0.35 -0.8 2,497,636 - ECD_02400 0.38 -2.0 2,497,642 - ECD_02400 0.38 -2.1 2,497,753 - ECD_02400 0.46 -2.9 2,497,753 - ECD_02400 0.46 -0.4 2,497,781 - ECD_02400 0.48 -1.0 2,498,096 + ECD_02400 0.69 -0.3 2,498,096 + ECD_02400 0.69 -0.2 2,498,097 - ECD_02400 0.69 -1.2 2,498,097 - ECD_02400 0.69 -0.8 2,498,097 - ECD_02400 0.69 -2.0 2,498,546 - -1.3 2,498,598 + -1.2 2,498,716 + -0.8 2,499,169 + ECD_02401 0.33 -2.6 2,499,169 + ECD_02401 0.33 -3.3 2,499,176 + ECD_02401 0.34 -2.8 2,499,310 + ECD_02401 0.44 -1.9
Or see this region's nucleotide sequence