Strain Fitness in Escherichia coli BL21 around ECD_02371

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02370 and ECD_02371 are separated by 145 nucleotidesECD_02371 and ECD_02372 overlap by 1 nucleotidesECD_02372 and ECD_02373 are separated by 252 nucleotides ECD_02370: ECD_02370 - dihydrodipicolinate synthase, at 2,463,371 to 2,464,249 _02370 ECD_02371: ECD_02371 - transcriptional repressor, regulatory protein accessory to GcvA, at 2,464,395 to 2,464,967 _02371 ECD_02372: ECD_02372 - peroxiredoxin; thiol peroxidase, thioredoxin-dependent, at 2,464,967 to 2,465,437 _02372 ECD_02373: ECD_02373 - hydrogenase 4, 4Fe-4S subunit, at 2,465,690 to 2,466,307 _02373 Position (kb) 2464 2465Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2464.335 kb on + strandat 2464.335 kb on + strandat 2464.336 kb on - strandat 2464.336 kb on - strandat 2464.336 kb on - strandat 2464.336 kb on - strandat 2464.379 kb on + strandat 2464.416 kb on + strandat 2464.416 kb on + strandat 2464.416 kb on + strandat 2464.499 kb on + strand, within ECD_02371at 2464.544 kb on + strand, within ECD_02371at 2464.545 kb on - strand, within ECD_02371at 2464.547 kb on + strand, within ECD_02371at 2464.577 kb on + strand, within ECD_02371at 2464.578 kb on - strand, within ECD_02371at 2464.717 kb on + strand, within ECD_02371at 2464.717 kb on + strand, within ECD_02371at 2464.754 kb on + strand, within ECD_02371at 2464.754 kb on + strand, within ECD_02371at 2464.755 kb on - strand, within ECD_02371at 2464.866 kb on - strand, within ECD_02371at 2464.888 kb on + strand, within ECD_02371at 2464.888 kb on + strand, within ECD_02371at 2464.889 kb on - strand, within ECD_02371at 2464.893 kb on - strand, within ECD_02371at 2464.893 kb on - strand, within ECD_02371at 2464.916 kb on + strandat 2464.961 kb on + strandat 2464.962 kb on - strandat 2464.962 kb on - strandat 2464.965 kb on + strandat 2465.439 kb on + strandat 2465.440 kb on - strandat 2465.480 kb on + strandat 2465.481 kb on - strandat 2465.481 kb on - strandat 2465.481 kb on - strandat 2465.725 kb on + strandat 2465.734 kb on + strandat 2465.734 kb on + strandat 2465.734 kb on + strandat 2465.734 kb on + strandat 2465.735 kb on - strandat 2465.735 kb on - strandat 2465.735 kb on - strandat 2465.735 kb on - strandat 2465.738 kb on - strandat 2465.767 kb on + strand, within ECD_02373at 2465.768 kb on - strand, within ECD_02373

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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2,464,335 + -2.5
2,464,335 + +1.9
2,464,336 - +3.3
2,464,336 - -0.4
2,464,336 - -0.4
2,464,336 - +1.9
2,464,379 + -0.6
2,464,416 + -0.8
2,464,416 + +2.4
2,464,416 + -1.3
2,464,499 + ECD_02371 0.18 +2.5
2,464,544 + ECD_02371 0.26 -0.5
2,464,545 - ECD_02371 0.26 +1.1
2,464,547 + ECD_02371 0.27 +1.7
2,464,577 + ECD_02371 0.32 +1.1
2,464,578 - ECD_02371 0.32 -1.9
2,464,717 + ECD_02371 0.56 -0.0
2,464,717 + ECD_02371 0.56 +2.9
2,464,754 + ECD_02371 0.63 +1.5
2,464,754 + ECD_02371 0.63 +0.6
2,464,755 - ECD_02371 0.63 -0.2
2,464,866 - ECD_02371 0.82 -1.4
2,464,888 + ECD_02371 0.86 +0.6
2,464,888 + ECD_02371 0.86 +1.2
2,464,889 - ECD_02371 0.86 -0.5
2,464,893 - ECD_02371 0.87 +0.2
2,464,893 - ECD_02371 0.87 +0.6
2,464,916 + +0.3
2,464,961 + +1.5
2,464,962 - +1.2
2,464,962 - -1.9
2,464,965 + +2.9
2,465,439 + -3.0
2,465,440 - -1.1
2,465,480 + -1.3
2,465,481 - -2.2
2,465,481 - +3.5
2,465,481 - +0.6
2,465,725 + +1.2
2,465,734 + -2.4
2,465,734 + -1.4
2,465,734 + +1.6
2,465,734 + -2.8
2,465,735 - +1.5
2,465,735 - -0.7
2,465,735 - -1.3
2,465,735 - +0.0
2,465,738 - -1.0
2,465,767 + ECD_02373 0.12 +2.2
2,465,768 - ECD_02373 0.13 -0.2

Or see this region's nucleotide sequence