Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02339 and ECD_02340 are separated by 9 nucleotides ECD_02340 and ECD_02341 are separated by 20 nucleotides ECD_02341 and ECD_02342 are separated by 11 nucleotides
ECD_02339: ECD_02339 - putative ethanol utilization carboxysome structural protein, at 2,426,921 to 2,427,580
_02339
ECD_02340: ECD_02340 - ethanolamine ammonia-lyase, small subunit (light chain), at 2,427,590 to 2,428,477
_02340
ECD_02341: ECD_02341 - ethanolamine ammonia-lyase, large subunit, heavy chain, at 2,428,498 to 2,429,859
_02341
ECD_02342: ECD_02342 - reactivating factor for ethanolamine ammonia lyase, at 2,429,871 to 2,431,274
_02342
Position (kb)
2428
2429
2430 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2427.570 kb on - strand at 2427.703 kb on + strand, within ECD_02340 at 2427.704 kb on - strand, within ECD_02340 at 2427.704 kb on - strand, within ECD_02340 at 2427.868 kb on - strand, within ECD_02340 at 2427.945 kb on + strand, within ECD_02340 at 2427.985 kb on + strand, within ECD_02340 at 2427.996 kb on - strand, within ECD_02340 at 2428.109 kb on + strand, within ECD_02340 at 2428.110 kb on - strand, within ECD_02340 at 2428.165 kb on + strand, within ECD_02340 at 2428.213 kb on + strand, within ECD_02340 at 2428.277 kb on + strand, within ECD_02340 at 2428.277 kb on + strand, within ECD_02340 at 2428.278 kb on - strand, within ECD_02340 at 2428.278 kb on - strand, within ECD_02340 at 2428.280 kb on + strand, within ECD_02340 at 2428.281 kb on - strand, within ECD_02340 at 2428.281 kb on - strand, within ECD_02340 at 2428.338 kb on - strand, within ECD_02340 at 2428.485 kb on + strand at 2428.486 kb on - strand at 2428.552 kb on - strand at 2428.606 kb on + strand at 2428.607 kb on - strand at 2428.692 kb on - strand, within ECD_02341 at 2428.765 kb on - strand, within ECD_02341 at 2428.786 kb on - strand, within ECD_02341 at 2428.859 kb on + strand, within ECD_02341 at 2428.926 kb on - strand, within ECD_02341 at 2428.930 kb on - strand, within ECD_02341 at 2428.930 kb on - strand, within ECD_02341 at 2428.930 kb on - strand, within ECD_02341 at 2428.930 kb on - strand, within ECD_02341 at 2428.946 kb on - strand, within ECD_02341 at 2429.119 kb on - strand, within ECD_02341 at 2429.231 kb on + strand, within ECD_02341 at 2429.232 kb on - strand, within ECD_02341 at 2429.328 kb on - strand, within ECD_02341 at 2429.606 kb on + strand, within ECD_02341 at 2429.825 kb on + strand at 2429.827 kb on + strand at 2429.827 kb on + strand at 2429.828 kb on - strand at 2429.828 kb on - strand at 2429.851 kb on + strand at 2429.859 kb on + strand at 2429.859 kb on + strand at 2429.933 kb on + strand at 2429.947 kb on + strand at 2430.001 kb on - strand at 2430.167 kb on - strand, within ECD_02342 at 2430.279 kb on + strand, within ECD_02342 at 2430.280 kb on - strand, within ECD_02342 at 2430.372 kb on + strand, within ECD_02342 at 2430.373 kb on - strand, within ECD_02342 at 2430.373 kb on - strand, within ECD_02342 at 2430.373 kb on - strand, within ECD_02342 at 2430.469 kb on + strand, within ECD_02342 at 2430.796 kb on + strand, within ECD_02342 at 2430.796 kb on + strand, within ECD_02342
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 2,427,570 - -1.9 2,427,703 + ECD_02340 0.13 -1.8 2,427,704 - ECD_02340 0.13 +0.5 2,427,704 - ECD_02340 0.13 +1.2 2,427,868 - ECD_02340 0.31 +0.5 2,427,945 + ECD_02340 0.40 -0.1 2,427,985 + ECD_02340 0.44 -1.7 2,427,996 - ECD_02340 0.46 +1.2 2,428,109 + ECD_02340 0.58 -1.2 2,428,110 - ECD_02340 0.59 +0.5 2,428,165 + ECD_02340 0.65 +1.0 2,428,213 + ECD_02340 0.70 -1.5 2,428,277 + ECD_02340 0.77 -1.6 2,428,277 + ECD_02340 0.77 -1.6 2,428,278 - ECD_02340 0.77 -2.1 2,428,278 - ECD_02340 0.77 +4.3 2,428,280 + ECD_02340 0.78 -1.2 2,428,281 - ECD_02340 0.78 +2.6 2,428,281 - ECD_02340 0.78 -0.7 2,428,338 - ECD_02340 0.84 +1.0 2,428,485 + -0.1 2,428,486 - -1.6 2,428,552 - +0.0 2,428,606 + -1.8 2,428,607 - -1.4 2,428,692 - ECD_02341 0.14 +2.7 2,428,765 - ECD_02341 0.20 -0.2 2,428,786 - ECD_02341 0.21 -0.6 2,428,859 + ECD_02341 0.27 -1.4 2,428,926 - ECD_02341 0.31 -0.3 2,428,930 - ECD_02341 0.32 -0.8 2,428,930 - ECD_02341 0.32 -1.9 2,428,930 - ECD_02341 0.32 +2.6 2,428,930 - ECD_02341 0.32 +0.1 2,428,946 - ECD_02341 0.33 -1.5 2,429,119 - ECD_02341 0.46 +3.3 2,429,231 + ECD_02341 0.54 +1.9 2,429,232 - ECD_02341 0.54 -0.1 2,429,328 - ECD_02341 0.61 -1.9 2,429,606 + ECD_02341 0.81 -2.4 2,429,825 + +1.0 2,429,827 + +1.0 2,429,827 + -1.9 2,429,828 - -1.0 2,429,828 - +0.5 2,429,851 + -0.5 2,429,859 + -0.1 2,429,859 + -0.3 2,429,933 + -1.5 2,429,947 + -0.9 2,430,001 - -0.3 2,430,167 - ECD_02342 0.21 -0.8 2,430,279 + ECD_02342 0.29 -2.0 2,430,280 - ECD_02342 0.29 +0.2 2,430,372 + ECD_02342 0.36 -1.2 2,430,373 - ECD_02342 0.36 +1.7 2,430,373 - ECD_02342 0.36 -0.3 2,430,373 - ECD_02342 0.36 -0.4 2,430,469 + ECD_02342 0.43 -1.2 2,430,796 + ECD_02342 0.66 +2.4 2,430,796 + ECD_02342 0.66 +3.2
Or see this region's nucleotide sequence