Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02100 and ECD_02101 are separated by 154 nucleotides ECD_02101 and ECD_02102 are separated by 222 nucleotides ECD_02102 and ECD_02103 are separated by 117 nucleotides
ECD_02100: ECD_02100 - UPF0153 cysteine cluster protein, at 2,159,890 to 2,160,144
_02100
ECD_02101: ECD_02101 - elongation factor P-like protein, at 2,160,299 to 2,160,871
_02101
ECD_02102: ECD_02102 - putative NAD-dependent D-mannonate oxidoreductase, at 2,161,094 to 2,162,560
_02102
ECD_02103: ECD_02103 - Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein, at 2,162,678 to 2,163,664
_02103
Position (kb)
2161
2162
2163 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2160.144 kb on + strand at 2160.145 kb on - strand at 2160.192 kb on - strand at 2160.406 kb on + strand, within ECD_02101 at 2160.406 kb on + strand, within ECD_02101 at 2160.414 kb on - strand, within ECD_02101 at 2160.453 kb on + strand, within ECD_02101 at 2160.510 kb on - strand, within ECD_02101 at 2160.566 kb on + strand, within ECD_02101 at 2160.577 kb on + strand, within ECD_02101 at 2161.094 kb on - strand at 2161.132 kb on - strand at 2161.218 kb on + strand at 2161.326 kb on + strand, within ECD_02102 at 2161.326 kb on + strand, within ECD_02102 at 2161.326 kb on + strand, within ECD_02102 at 2161.327 kb on - strand, within ECD_02102 at 2161.328 kb on + strand, within ECD_02102 at 2161.397 kb on - strand, within ECD_02102 at 2161.488 kb on - strand, within ECD_02102 at 2161.492 kb on + strand, within ECD_02102 at 2161.493 kb on - strand, within ECD_02102 at 2161.493 kb on - strand, within ECD_02102 at 2161.655 kb on - strand, within ECD_02102 at 2162.003 kb on + strand, within ECD_02102 at 2162.082 kb on + strand, within ECD_02102 at 2162.083 kb on - strand, within ECD_02102 at 2162.117 kb on - strand, within ECD_02102 at 2162.131 kb on - strand, within ECD_02102 at 2162.152 kb on - strand, within ECD_02102 at 2162.253 kb on + strand, within ECD_02102 at 2162.651 kb on - strand at 2162.655 kb on + strand at 2162.656 kb on - strand at 2162.908 kb on + strand, within ECD_02103 at 2163.211 kb on - strand, within ECD_02103 at 2163.336 kb on + strand, within ECD_02103
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 2,160,144 + +2.8 2,160,145 - -1.5 2,160,192 - -0.6 2,160,406 + ECD_02101 0.19 -0.3 2,160,406 + ECD_02101 0.19 -1.3 2,160,414 - ECD_02101 0.20 -0.6 2,160,453 + ECD_02101 0.27 +0.9 2,160,510 - ECD_02101 0.37 -0.3 2,160,566 + ECD_02101 0.47 +1.2 2,160,577 + ECD_02101 0.49 +2.1 2,161,094 - -1.8 2,161,132 - +0.9 2,161,218 + -0.3 2,161,326 + ECD_02102 0.16 -1.5 2,161,326 + ECD_02102 0.16 -0.3 2,161,326 + ECD_02102 0.16 +1.1 2,161,327 - ECD_02102 0.16 +1.1 2,161,328 + ECD_02102 0.16 -0.9 2,161,397 - ECD_02102 0.21 -1.9 2,161,488 - ECD_02102 0.27 -0.5 2,161,492 + ECD_02102 0.27 +1.3 2,161,493 - ECD_02102 0.27 -2.3 2,161,493 - ECD_02102 0.27 -0.6 2,161,655 - ECD_02102 0.38 -1.0 2,162,003 + ECD_02102 0.62 -0.2 2,162,082 + ECD_02102 0.67 -2.0 2,162,083 - ECD_02102 0.67 -0.1 2,162,117 - ECD_02102 0.70 +2.0 2,162,131 - ECD_02102 0.71 -0.3 2,162,152 - ECD_02102 0.72 -1.0 2,162,253 + ECD_02102 0.79 -0.3 2,162,651 - +0.2 2,162,655 + -0.0 2,162,656 - -0.3 2,162,908 + ECD_02103 0.23 +0.1 2,163,211 - ECD_02103 0.54 -0.3 2,163,336 + ECD_02103 0.67 +0.0
Or see this region's nucleotide sequence