Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02037 and ECD_02038 are separated by 336 nucleotides ECD_02038 and ECD_02039 overlap by 53 nucleotides ECD_02039 and ECD_02040 are separated by 156 nucleotides ECD_02040 and ECD_02041 overlap by 82 nucleotides ECD_02041 and ECD_02042 are separated by 28 nucleotides
ECD_02037: ECD_02037 - hypothetical protein, at 2,085,463 to 2,085,714
_02037
ECD_02038: ECD_02038 - hypothetical protein, at 2,086,051 to 2,086,449
_02038
ECD_02039: ECD_02039 - hypothetical protein, at 2,086,397 to 2,086,588
_02039
ECD_02040: ECD_02040 - IS1 protein InsB, at 2,086,745 to 2,087,248
_02040
ECD_02041: ECD_02041 - IS1 protein InsA, at 2,087,167 to 2,087,442
_02041
ECD_02042: ECD_02042 - DUF2574 family protein, at 2,087,471 to 2,087,659
_02042
Position (kb)
2086
2087 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2085.667 kb on + strand, within ECD_02037 at 2085.716 kb on + strand at 2085.793 kb on - strand at 2085.933 kb on + strand at 2086.016 kb on - strand at 2086.069 kb on + strand at 2086.076 kb on + strand at 2086.248 kb on - strand, within ECD_02038 at 2086.534 kb on - strand, within ECD_02039 at 2086.584 kb on - strand at 2086.613 kb on - strand at 2087.533 kb on + strand, within ECD_02042 at 2087.539 kb on + strand, within ECD_02042
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 2,085,667 + ECD_02037 0.81 +3.3 2,085,716 + +0.3 2,085,793 - -1.5 2,085,933 + -1.2 2,086,016 - -1.6 2,086,069 + -0.2 2,086,076 + -1.2 2,086,248 - ECD_02038 0.49 -2.4 2,086,534 - ECD_02039 0.71 -1.8 2,086,584 - -1.5 2,086,613 - -0.8 2,087,533 + ECD_02042 0.33 -0.5 2,087,539 + ECD_02042 0.36 -1.7
Or see this region's nucleotide sequence