Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01970 and ECD_01971 are separated by 21 nucleotides ECD_01971 and ECD_01972 are separated by 91 nucleotides ECD_01972 and ECD_01973 are separated by 317 nucleotides
ECD_01970: ECD_01970 - suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein, at 2,038,766 to 2,040,619
_01970
ECD_01971: ECD_01971 - deoxycytidine triphosphate deaminase; dCTP deaminase, at 2,040,641 to 2,041,222
_01971
ECD_01972: ECD_01972 - uridine/cytidine kinase, at 2,041,314 to 2,041,955
_01972
ECD_01973: ECD_01973 - putative diguanylate cyclase, at 2,042,273 to 2,045,590
_01973
Position (kb)
2041
2042 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2040.437 kb on - strand at 2040.437 kb on - strand at 2040.437 kb on - strand at 2040.518 kb on - strand at 2040.520 kb on - strand at 2040.520 kb on - strand at 2040.520 kb on - strand at 2041.650 kb on - strand, within ECD_01972 at 2041.656 kb on - strand, within ECD_01972 at 2041.656 kb on - strand, within ECD_01972 at 2041.667 kb on - strand, within ECD_01972 at 2041.769 kb on + strand, within ECD_01972 at 2041.808 kb on - strand, within ECD_01972 at 2042.298 kb on + strand at 2042.298 kb on + strand at 2042.298 kb on + strand at 2042.444 kb on + strand at 2042.501 kb on - strand at 2042.595 kb on + strand at 2042.751 kb on + strand, within ECD_01973 at 2042.929 kb on + strand, within ECD_01973
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 2,040,437 - +0.1 2,040,437 - -0.8 2,040,437 - +0.1 2,040,518 - +1.7 2,040,520 - -0.5 2,040,520 - -0.2 2,040,520 - +3.4 2,041,650 - ECD_01972 0.52 -1.4 2,041,656 - ECD_01972 0.53 -0.8 2,041,656 - ECD_01972 0.53 -1.1 2,041,667 - ECD_01972 0.55 -0.4 2,041,769 + ECD_01972 0.71 +0.4 2,041,808 - ECD_01972 0.77 -0.6 2,042,298 + -1.8 2,042,298 + +2.6 2,042,298 + +1.8 2,042,444 + +1.0 2,042,501 - -0.4 2,042,595 + -1.7 2,042,751 + ECD_01973 0.14 -1.1 2,042,929 + ECD_01973 0.20 -0.9
Or see this region's nucleotide sequence