Strain Fitness in Escherichia coli BL21 around ECD_01887

Experiment: P2_phage_0.5625_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01886 and ECD_01887 are separated by 0 nucleotidesECD_01887 and ECD_01888 are separated by 256 nucleotides ECD_01886: ECD_01886 - membrane-anchored, periplasmic TMAO, DMSO reductase, at 1,944,625 to 1,945,629 _01886 ECD_01887: ECD_01887 - inner membrane heme subunit for periplasmic YedYZ reductase, at 1,945,630 to 1,946,265 _01887 ECD_01888: ECD_01888 - zinc and cadmium binding protein, periplasmic, at 1,946,522 to 1,947,172 _01888 Position (kb) 1945 1946 1947Strain fitness (log2 ratio) -2 -1 0 1at 1945.228 kb on + strand, within ECD_01886at 1945.234 kb on + strand, within ECD_01886at 1945.235 kb on - strand, within ECD_01886at 1945.875 kb on - strand, within ECD_01887at 1946.142 kb on + strand, within ECD_01887at 1946.200 kb on + strand, within ECD_01887at 1946.263 kb on + strandat 1946.271 kb on + strandat 1946.557 kb on - strandat 1947.207 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
remove
1,945,228 + ECD_01886 0.60 -0.2
1,945,234 + ECD_01886 0.61 -0.5
1,945,235 - ECD_01886 0.61 +0.9
1,945,875 - ECD_01887 0.39 -1.1
1,946,142 + ECD_01887 0.81 -0.5
1,946,200 + ECD_01887 0.90 -0.8
1,946,263 + -1.7
1,946,271 + +1.5
1,946,557 - -2.4
1,947,207 + +0.3

Or see this region's nucleotide sequence