Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01790 and ECD_01791 are separated by 428 nucleotides ECD_01791 and ECD_01792 overlap by 4 nucleotides ECD_01792 and ECD_01793 are separated by 165 nucleotides ECD_01793 and ECD_01794 are separated by 12 nucleotides
ECD_01790: ECD_01790 - UPF0266 family inner membrane protein, at 1,850,528 to 1,850,986
_01790
ECD_01791: ECD_01791 - putative Mn(2+) efflux pump, mntR-regulated, at 1,851,415 to 1,851,981
_01791
ECD_01792: ECD_01792 - 23S rRNA m(1)G745 methyltransferase, SAM-dependent, at 1,851,978 to 1,852,787
_01792
ECD_01793: ECD_01793 - stress protein, member of the CspA-family, at 1,852,953 to 1,853,162
_01793
ECD_01794: ECD_01794 - DUF2527 family heat-induced protein, at 1,853,175 to 1,853,318
_01794
Position (kb)
1851
1852
1853 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1851.240 kb on + strand at 1851.296 kb on + strand at 1851.356 kb on + strand at 1851.356 kb on + strand at 1851.357 kb on - strand at 1851.388 kb on + strand at 1851.852 kb on + strand, within ECD_01791 at 1852.493 kb on - strand, within ECD_01792 at 1852.496 kb on - strand, within ECD_01792 at 1852.603 kb on - strand, within ECD_01792 at 1852.687 kb on + strand, within ECD_01792 at 1852.732 kb on + strand at 1852.733 kb on - strand at 1852.733 kb on - strand at 1852.733 kb on - strand at 1852.733 kb on - strand at 1852.881 kb on - strand at 1852.881 kb on - strand at 1852.926 kb on - strand at 1852.926 kb on - strand at 1852.959 kb on - strand at 1852.959 kb on - strand at 1852.966 kb on - strand at 1853.071 kb on - strand, within ECD_01793 at 1853.071 kb on - strand, within ECD_01793 at 1853.121 kb on - strand, within ECD_01793 at 1853.203 kb on - strand, within ECD_01794 at 1853.212 kb on - strand, within ECD_01794 at 1853.212 kb on - strand, within ECD_01794 at 1853.244 kb on - strand, within ECD_01794 at 1853.244 kb on - strand, within ECD_01794 at 1853.244 kb on - strand, within ECD_01794 at 1853.246 kb on - strand, within ECD_01794 at 1853.246 kb on - strand, within ECD_01794 at 1853.319 kb on - strand at 1853.449 kb on - strand at 1853.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 1,851,240 + -0.7 1,851,296 + -0.6 1,851,356 + +3.0 1,851,356 + +0.9 1,851,357 - +2.7 1,851,388 + -0.3 1,851,852 + ECD_01791 0.77 +0.9 1,852,493 - ECD_01792 0.64 -0.8 1,852,496 - ECD_01792 0.64 -0.9 1,852,603 - ECD_01792 0.77 -0.5 1,852,687 + ECD_01792 0.88 -0.8 1,852,732 + -0.6 1,852,733 - -1.1 1,852,733 - +0.2 1,852,733 - +0.3 1,852,733 - -0.1 1,852,881 - -0.7 1,852,881 - -0.4 1,852,926 - +2.2 1,852,926 - +2.1 1,852,959 - +2.8 1,852,959 - +0.9 1,852,966 - +1.1 1,853,071 - ECD_01793 0.56 -2.0 1,853,071 - ECD_01793 0.56 -0.5 1,853,121 - ECD_01793 0.80 +2.5 1,853,203 - ECD_01794 0.19 +1.8 1,853,212 - ECD_01794 0.26 +0.5 1,853,212 - ECD_01794 0.26 +0.5 1,853,244 - ECD_01794 0.48 +1.3 1,853,244 - ECD_01794 0.48 -0.3 1,853,244 - ECD_01794 0.48 +0.7 1,853,246 - ECD_01794 0.49 -1.1 1,853,246 - ECD_01794 0.49 +3.5 1,853,319 - -1.1 1,853,449 - +4.0 1,853,581 - +1.6
Or see this region's nucleotide sequence