Strain Fitness in Escherichia coli BL21 around ECD_01645

Experiment: P2_phage_0.5625_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01644 and ECD_01645 are separated by 556 nucleotidesECD_01645 and ECD_01646 are separated by 310 nucleotidesECD_01646 and ECD_01647 are separated by 63 nucleotides ECD_01644: ECD_01644 - uncharacterized protein, at 1,700,201 to 1,700,410 _01644 ECD_01645: ECD_01645 - pyruvate kinase I, at 1,700,967 to 1,702,379 _01645 ECD_01646: ECD_01646 - murein lipoprotein, at 1,702,690 to 1,702,926 _01646 ECD_01647: ECD_01647 - murein L,D-transpeptidase, at 1,702,990 to 1,703,994 _01647 Position (kb) 1700 1701 1702 1703Strain fitness (log2 ratio) -1 0 1 2 3at 1700.426 kb on - strandat 1700.666 kb on - strandat 1701.029 kb on + strandat 1701.767 kb on + strand, within ECD_01645at 1702.109 kb on + strand, within ECD_01645at 1702.130 kb on + strand, within ECD_01645at 1702.312 kb on + strandat 1702.654 kb on + strandat 1702.675 kb on + strandat 1702.924 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
remove
1,700,426 - +0.0
1,700,666 - -1.0
1,701,029 + +0.7
1,701,767 + ECD_01645 0.57 +0.3
1,702,109 + ECD_01645 0.81 -0.7
1,702,130 + ECD_01645 0.82 -0.8
1,702,312 + -0.9
1,702,654 + +2.1
1,702,675 + +3.5
1,702,924 + +0.9

Or see this region's nucleotide sequence