Strain Fitness in Escherichia coli BL21 around ECD_01582

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01581 and ECD_01582 are separated by 198 nucleotidesECD_01582 and ECD_01583 are separated by 100 nucleotides ECD_01581: ECD_01581 - fumarate hydratase (fumarase A), aerobic Class I, at 1,631,928 to 1,633,574 _01581 ECD_01582: ECD_01582 - mannose-6-phosphate isomerase, at 1,633,773 to 1,634,948 _01582 ECD_01583: ECD_01583 - DUF945 family protein, at 1,635,049 to 1,636,557 _01583 Position (kb) 1633 1634 1635Strain fitness (log2 ratio) -1 0 1 2at 1632.818 kb on - strand, within ECD_01581at 1632.818 kb on - strand, within ECD_01581at 1632.891 kb on - strand, within ECD_01581at 1632.995 kb on - strand, within ECD_01581at 1632.995 kb on - strand, within ECD_01581at 1633.064 kb on - strand, within ECD_01581at 1633.111 kb on + strand, within ECD_01581at 1633.112 kb on - strand, within ECD_01581at 1633.116 kb on - strand, within ECD_01581at 1633.116 kb on - strand, within ECD_01581at 1633.160 kb on - strand, within ECD_01581at 1633.169 kb on - strand, within ECD_01581at 1633.322 kb on - strand, within ECD_01581at 1633.325 kb on + strand, within ECD_01581at 1633.511 kb on - strandat 1633.514 kb on - strandat 1633.967 kb on + strand, within ECD_01582at 1634.541 kb on + strand, within ECD_01582at 1634.762 kb on + strand, within ECD_01582at 1635.048 kb on + strandat 1635.054 kb on + strandat 1635.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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1,632,818 - ECD_01581 0.54 +0.6
1,632,818 - ECD_01581 0.54 -0.6
1,632,891 - ECD_01581 0.58 -1.1
1,632,995 - ECD_01581 0.65 +0.4
1,632,995 - ECD_01581 0.65 +1.3
1,633,064 - ECD_01581 0.69 -0.9
1,633,111 + ECD_01581 0.72 +0.6
1,633,112 - ECD_01581 0.72 +1.4
1,633,116 - ECD_01581 0.72 +1.2
1,633,116 - ECD_01581 0.72 +1.8
1,633,160 - ECD_01581 0.75 -0.9
1,633,169 - ECD_01581 0.75 -1.6
1,633,322 - ECD_01581 0.85 +2.5
1,633,325 + ECD_01581 0.85 -0.1
1,633,511 - +1.1
1,633,514 - +1.3
1,633,967 + ECD_01582 0.16 +0.2
1,634,541 + ECD_01582 0.65 -0.1
1,634,762 + ECD_01582 0.84 +0.5
1,635,048 + -0.8
1,635,054 + +0.1
1,635,054 + +1.7

Or see this region's nucleotide sequence