Strain Fitness in Escherichia coli BL21 around ECD_01565

Experiment: P2_phage_0.5625_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01564 and ECD_01565 are separated by 106 nucleotidesECD_01565 and ECD_01566 are separated by 423 nucleotides ECD_01564: ECD_01564 - LysR family putative transcriptional regulator, at 1,613,896 to 1,614,789 _01564 ECD_01565: ECD_01565 - putative arabinose efflux transporter, at 1,614,896 to 1,616,149 _01565 ECD_01566: ECD_01566 - acid shock-inducible periplasmic protein, at 1,616,573 to 1,616,881 _01566 Position (kb) 1614 1615 1616 1617Strain fitness (log2 ratio) -1 0 1 2 3at 1614.174 kb on - strand, within ECD_01564at 1614.340 kb on - strand, within ECD_01564at 1614.762 kb on - strandat 1615.117 kb on + strand, within ECD_01565at 1615.118 kb on - strand, within ECD_01565at 1616.053 kb on + strandat 1616.279 kb on - strandat 1616.395 kb on - strandat 1617.126 kb on + strandat 1617.129 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
remove
1,614,174 - ECD_01564 0.31 +0.6
1,614,340 - ECD_01564 0.50 +1.2
1,614,762 - -0.5
1,615,117 + ECD_01565 0.18 -0.6
1,615,118 - ECD_01565 0.18 -0.4
1,616,053 + +1.4
1,616,279 - -1.0
1,616,395 - +3.7
1,617,126 + +0.8
1,617,129 + +0.9

Or see this region's nucleotide sequence