Strain Fitness in Escherichia coli BL21 around ECD_01527

Experiment: P2_phage_0.5625_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01525 and ECD_01527 are separated by 369 nucleotidesECD_01527 and ECD_01528 are separated by 155 nucleotidesECD_01528 and ECD_01529 are separated by 14 nucleotides ECD_01525: ECD_01525 - putative transposase for IS3, at 1,587,292 to 1,588,158 _01525 ECD_01527: ECD_01527 - putative lipoprotein, at 1,588,528 to 1,589,052 _01527 ECD_01528: ECD_01528 - antitermination protein Q-like protein from lambdoid prophage DLP12, at 1,589,208 to 1,589,588 _01528 ECD_01529: ECD_01529 - Qin prophage; uncharacterized protein, at 1,589,603 to 1,590,181 _01529 Position (kb) 1588 1589 1590Strain fitness (log2 ratio) -1 0 1 2 3at 1588.475 kb on + strandat 1588.577 kb on + strandat 1589.132 kb on - strandat 1589.853 kb on + strand, within ECD_01529at 1589.854 kb on - strand, within ECD_01529

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
remove
1,588,475 + -0.2
1,588,577 + +3.2
1,589,132 - +2.4
1,589,853 + ECD_01529 0.43 -1.4
1,589,854 - ECD_01529 0.43 +0.4

Or see this region's nucleotide sequence