Strain Fitness in Escherichia coli BL21 around ECD_01409

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01408 and ECD_01409 are separated by 241 nucleotidesECD_01409 and ECD_01410 are separated by 114 nucleotides ECD_01408: ECD_01408 - putative iron outer membrane transporter, at 1,475,026 to 1,477,128 _01408 ECD_01409: ECD_01409 - ATP-binding protein, periplasmic, function unknown, at 1,477,370 to 1,478,431 _01409 ECD_01410: ECD_01410 - L-asparagine transporter, at 1,478,546 to 1,480,045 _01410 Position (kb) 1477 1478 1479Strain fitness (log2 ratio) -1 0 1 2 3at 1476.537 kb on - strand, within ECD_01408at 1476.885 kb on - strand, within ECD_01408at 1477.377 kb on + strandat 1477.378 kb on - strandat 1477.513 kb on + strand, within ECD_01409at 1478.161 kb on + strand, within ECD_01409at 1478.229 kb on - strand, within ECD_01409at 1478.658 kb on - strandat 1478.698 kb on + strand, within ECD_01410at 1478.699 kb on - strand, within ECD_01410at 1478.699 kb on - strand, within ECD_01410at 1478.699 kb on - strand, within ECD_01410at 1478.699 kb on - strand, within ECD_01410at 1479.128 kb on - strand, within ECD_01410at 1479.426 kb on - strand, within ECD_01410

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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1,476,537 - ECD_01408 0.72 +0.4
1,476,885 - ECD_01408 0.88 -1.4
1,477,377 + +1.1
1,477,378 - +3.0
1,477,513 + ECD_01409 0.13 -0.5
1,478,161 + ECD_01409 0.74 -1.5
1,478,229 - ECD_01409 0.81 -0.5
1,478,658 - +2.1
1,478,698 + ECD_01410 0.10 +1.0
1,478,699 - ECD_01410 0.10 +1.3
1,478,699 - ECD_01410 0.10 +2.2
1,478,699 - ECD_01410 0.10 +1.3
1,478,699 - ECD_01410 0.10 -0.3
1,479,128 - ECD_01410 0.39 +1.0
1,479,426 - ECD_01410 0.59 -0.0

Or see this region's nucleotide sequence