Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01316 and ECD_01317 are separated by 329 nucleotides ECD_01317 and ECD_01318 are separated by 20 nucleotides ECD_01318 and ECD_01319 are separated by 254 nucleotides
ECD_01316: ECD_01316 - putative DNA-binding transcriptional regulator of abgABT operon, at 1,389,909 to 1,390,817
_01316
ECD_01317: ECD_01317 - DNA endonuclease, at 1,391,147 to 1,391,710
_01317
ECD_01318: ECD_01318 - diguanylate cyclase, csgD regulator, at 1,391,731 to 1,392,963
_01318
ECD_01319: ECD_01319 - putative Zn(II) transporter, at 1,393,218 to 1,394,201
_01319
Position (kb)
1391
1392
1393 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1391.063 kb on + strand at 1391.084 kb on + strand at 1391.116 kb on + strand at 1391.127 kb on + strand at 1391.555 kb on + strand, within ECD_01317 at 1391.555 kb on + strand, within ECD_01317 at 1391.555 kb on + strand, within ECD_01317 at 1391.555 kb on + strand, within ECD_01317 at 1391.649 kb on + strand, within ECD_01317 at 1391.653 kb on + strand, within ECD_01317 at 1392.049 kb on - strand, within ECD_01318 at 1392.049 kb on - strand, within ECD_01318 at 1392.247 kb on - strand, within ECD_01318 at 1392.250 kb on - strand, within ECD_01318 at 1392.262 kb on - strand, within ECD_01318 at 1392.466 kb on - strand, within ECD_01318 at 1393.310 kb on + strand at 1393.352 kb on + strand, within ECD_01319 at 1393.356 kb on + strand, within ECD_01319 at 1393.414 kb on + strand, within ECD_01319 at 1393.493 kb on + strand, within ECD_01319 at 1393.543 kb on + strand, within ECD_01319 at 1393.545 kb on + strand, within ECD_01319 at 1393.545 kb on + strand, within ECD_01319 at 1393.545 kb on + strand, within ECD_01319 at 1393.545 kb on + strand, within ECD_01319 at 1393.546 kb on - strand, within ECD_01319 at 1393.547 kb on + strand, within ECD_01319
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 1,391,063 + +1.9 1,391,084 + +2.3 1,391,116 + -1.1 1,391,127 + -0.9 1,391,555 + ECD_01317 0.72 +0.4 1,391,555 + ECD_01317 0.72 -0.3 1,391,555 + ECD_01317 0.72 -0.3 1,391,555 + ECD_01317 0.72 +0.5 1,391,649 + ECD_01317 0.89 +1.6 1,391,653 + ECD_01317 0.90 +2.9 1,392,049 - ECD_01318 0.26 +2.9 1,392,049 - ECD_01318 0.26 -1.1 1,392,247 - ECD_01318 0.42 +1.9 1,392,250 - ECD_01318 0.42 +0.9 1,392,262 - ECD_01318 0.43 +0.2 1,392,466 - ECD_01318 0.60 -0.1 1,393,310 + +0.9 1,393,352 + ECD_01319 0.14 +1.4 1,393,356 + ECD_01319 0.14 -0.9 1,393,414 + ECD_01319 0.20 -0.6 1,393,493 + ECD_01319 0.28 +1.2 1,393,543 + ECD_01319 0.33 -0.5 1,393,545 + ECD_01319 0.33 -0.3 1,393,545 + ECD_01319 0.33 -1.6 1,393,545 + ECD_01319 0.33 -0.7 1,393,545 + ECD_01319 0.33 +1.6 1,393,546 - ECD_01319 0.33 +0.8 1,393,547 + ECD_01319 0.33 +1.8
Or see this region's nucleotide sequence