Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01271 and ECD_01272 are separated by 311 nucleotides ECD_01272 and ECD_01273 are separated by 133 nucleotides ECD_01273 and ECD_01274 are separated by 302 nucleotides
ECD_01271: ECD_01271 - antimicrobial peptide transport ABC transporter periplasmic binding protein, at 1,341,834 to 1,343,477
_01271
ECD_01272: ECD_01272 - DUF2543 family protein, at 1,343,789 to 1,344,034
_01272
ECD_01273: ECD_01273 - putrescine importer, at 1,344,168 to 1,345,553
_01273
ECD_01274: ECD_01274 - glutamate--putrescine ligase, at 1,345,856 to 1,347,274
_01274
Position (kb) 1344
1345
1346 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1343.640 kb on - strand at 1343.640 kb on - strand at 1343.846 kb on - strand, within ECD_01272 at 1344.203 kb on - strand at 1344.245 kb on - strand at 1344.707 kb on - strand, within ECD_01273 at 1344.812 kb on - strand, within ECD_01273 at 1345.292 kb on + strand, within ECD_01273 at 1345.454 kb on - strand at 1345.696 kb on - strand at 1345.732 kb on + strand at 1345.965 kb on - strand at 1346.203 kb on + strand, within ECD_01274 at 1346.204 kb on - strand, within ECD_01274 at 1346.257 kb on - strand, within ECD_01274 at 1346.257 kb on - strand, within ECD_01274 at 1346.257 kb on - strand, within ECD_01274 at 1346.257 kb on - strand, within ECD_01274 at 1346.257 kb on - strand, within ECD_01274 at 1346.471 kb on - strand, within ECD_01274
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 1,343,640 - -1.3 1,343,640 - +1.5 1,343,846 - ECD_01272 0.23 +1.7 1,344,203 - +1.8 1,344,245 - +2.1 1,344,707 - ECD_01273 0.39 +0.2 1,344,812 - ECD_01273 0.46 -0.1 1,345,292 + ECD_01273 0.81 -0.4 1,345,454 - +3.8 1,345,696 - -0.9 1,345,732 + +3.1 1,345,965 - +0.1 1,346,203 + ECD_01274 0.24 -0.7 1,346,204 - ECD_01274 0.25 +1.0 1,346,257 - ECD_01274 0.28 +3.5 1,346,257 - ECD_01274 0.28 +1.4 1,346,257 - ECD_01274 0.28 -0.2 1,346,257 - ECD_01274 0.28 +0.3 1,346,257 - ECD_01274 0.28 +2.1 1,346,471 - ECD_01274 0.43 -0.4
Or see this region's nucleotide sequence