Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01161 and ECD_01162 are separated by 220 nucleotides ECD_01162 and ECD_01163 are separated by 51 nucleotides ECD_01163 and ECD_01164 are separated by 329 nucleotides
ECD_01161: ECD_01161 - sodium:proton antiporter, at 1,221,324 to 1,222,865
_01161
ECD_01162: ECD_01162 - fatty acid metabolism regulon transcriptional regulator, at 1,223,086 to 1,223,805
_01162
ECD_01163: ECD_01163 - SpoVR family stationary phase protein, at 1,223,857 to 1,225,389
_01163
ECD_01164: ECD_01164 - D-amino acid dehydrogenase, at 1,225,719 to 1,227,017
_01164
Position (kb)
1223
1224
1225
1226 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1223.026 kb on + strand at 1223.172 kb on + strand, within ECD_01162 at 1223.528 kb on + strand, within ECD_01162 at 1223.662 kb on + strand, within ECD_01162 at 1224.091 kb on - strand, within ECD_01163 at 1224.317 kb on + strand, within ECD_01163 at 1224.358 kb on - strand, within ECD_01163 at 1224.405 kb on - strand, within ECD_01163 at 1224.418 kb on - strand, within ECD_01163 at 1224.420 kb on - strand, within ECD_01163 at 1224.497 kb on + strand, within ECD_01163 at 1224.764 kb on - strand, within ECD_01163 at 1225.135 kb on - strand, within ECD_01163 at 1225.696 kb on + strand at 1225.996 kb on + strand, within ECD_01164 at 1226.000 kb on + strand, within ECD_01164 at 1226.000 kb on + strand, within ECD_01164 at 1226.000 kb on + strand, within ECD_01164 at 1226.059 kb on - strand, within ECD_01164
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 1,223,026 + -0.3 1,223,172 + ECD_01162 0.12 -0.1 1,223,528 + ECD_01162 0.61 -0.1 1,223,662 + ECD_01162 0.80 -0.7 1,224,091 - ECD_01163 0.15 +0.8 1,224,317 + ECD_01163 0.30 +0.1 1,224,358 - ECD_01163 0.33 -0.7 1,224,405 - ECD_01163 0.36 -0.8 1,224,418 - ECD_01163 0.37 +0.1 1,224,420 - ECD_01163 0.37 +3.7 1,224,497 + ECD_01163 0.42 -1.2 1,224,764 - ECD_01163 0.59 +1.6 1,225,135 - ECD_01163 0.83 +2.4 1,225,696 + +2.2 1,225,996 + ECD_01164 0.21 +2.0 1,226,000 + ECD_01164 0.22 +0.3 1,226,000 + ECD_01164 0.22 +2.4 1,226,000 + ECD_01164 0.22 +2.3 1,226,059 - ECD_01164 0.26 +2.8
Or see this region's nucleotide sequence