Strain Fitness in Escherichia coli BL21 around ECD_01163

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01161 and ECD_01162 are separated by 220 nucleotidesECD_01162 and ECD_01163 are separated by 51 nucleotidesECD_01163 and ECD_01164 are separated by 329 nucleotides ECD_01161: ECD_01161 - sodium:proton antiporter, at 1,221,324 to 1,222,865 _01161 ECD_01162: ECD_01162 - fatty acid metabolism regulon transcriptional regulator, at 1,223,086 to 1,223,805 _01162 ECD_01163: ECD_01163 - SpoVR family stationary phase protein, at 1,223,857 to 1,225,389 _01163 ECD_01164: ECD_01164 - D-amino acid dehydrogenase, at 1,225,719 to 1,227,017 _01164 Position (kb) 1223 1224 1225 1226Strain fitness (log2 ratio) -1 0 1 2 3at 1223.026 kb on + strandat 1223.172 kb on + strand, within ECD_01162at 1223.528 kb on + strand, within ECD_01162at 1223.662 kb on + strand, within ECD_01162at 1224.091 kb on - strand, within ECD_01163at 1224.317 kb on + strand, within ECD_01163at 1224.358 kb on - strand, within ECD_01163at 1224.405 kb on - strand, within ECD_01163at 1224.418 kb on - strand, within ECD_01163at 1224.420 kb on - strand, within ECD_01163at 1224.497 kb on + strand, within ECD_01163at 1224.764 kb on - strand, within ECD_01163at 1225.135 kb on - strand, within ECD_01163at 1225.696 kb on + strandat 1225.996 kb on + strand, within ECD_01164at 1226.000 kb on + strand, within ECD_01164at 1226.000 kb on + strand, within ECD_01164at 1226.000 kb on + strand, within ECD_01164at 1226.059 kb on - strand, within ECD_01164

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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1,223,026 + -0.3
1,223,172 + ECD_01162 0.12 -0.1
1,223,528 + ECD_01162 0.61 -0.1
1,223,662 + ECD_01162 0.80 -0.7
1,224,091 - ECD_01163 0.15 +0.8
1,224,317 + ECD_01163 0.30 +0.1
1,224,358 - ECD_01163 0.33 -0.7
1,224,405 - ECD_01163 0.36 -0.8
1,224,418 - ECD_01163 0.37 +0.1
1,224,420 - ECD_01163 0.37 +3.7
1,224,497 + ECD_01163 0.42 -1.2
1,224,764 - ECD_01163 0.59 +1.6
1,225,135 - ECD_01163 0.83 +2.4
1,225,696 + +2.1
1,225,996 + ECD_01164 0.21 +1.9
1,226,000 + ECD_01164 0.22 +0.2
1,226,000 + ECD_01164 0.22 +2.4
1,226,000 + ECD_01164 0.22 +2.3
1,226,059 - ECD_01164 0.26 +2.8

Or see this region's nucleotide sequence