Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01107 and ECD_01108 are separated by 240 nucleotides ECD_01108 and ECD_01109 are separated by 82 nucleotides ECD_01109 and ECD_01110 are separated by 143 nucleotides
ECD_01107: ECD_01107 - repressor for bhsA(ycfR), at 1,170,792 to 1,171,424
_01107
ECD_01108: ECD_01108 - biofilm, cell surface and signaling protein, at 1,171,665 to 1,171,922
_01108
ECD_01109: ECD_01109 - L,D-transpeptidase linking Lpp to murein, at 1,172,005 to 1,172,967
_01109
ECD_01110: ECD_01110 - transcription-repair coupling factor, at 1,173,111 to 1,176,557
_01110
Position (kb)
1172
1173 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1171.258 kb on - strand, within ECD_01107 at 1172.570 kb on - strand, within ECD_01109 at 1172.624 kb on + strand, within ECD_01109 at 1172.627 kb on + strand, within ECD_01109 at 1172.627 kb on + strand, within ECD_01109 at 1173.471 kb on - strand, within ECD_01110 at 1173.633 kb on - strand, within ECD_01110 at 1173.634 kb on + strand, within ECD_01110 at 1173.635 kb on - strand, within ECD_01110 at 1173.635 kb on - strand, within ECD_01110 at 1173.635 kb on - strand, within ECD_01110 at 1173.635 kb on - strand, within ECD_01110
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 1,171,258 - ECD_01107 0.74 +0.1 1,172,570 - ECD_01109 0.59 -1.2 1,172,624 + ECD_01109 0.64 -0.4 1,172,627 + ECD_01109 0.65 +1.6 1,172,627 + ECD_01109 0.65 -0.3 1,173,471 - ECD_01110 0.10 -0.0 1,173,633 - ECD_01110 0.15 -0.0 1,173,634 + ECD_01110 0.15 -0.1 1,173,635 - ECD_01110 0.15 +2.9 1,173,635 - ECD_01110 0.15 +1.8 1,173,635 - ECD_01110 0.15 +2.9 1,173,635 - ECD_01110 0.15 +0.9
Or see this region's nucleotide sequence