Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01103 and ECD_01104 are separated by 22 nucleotides ECD_01104 and ECD_01105 are separated by 407 nucleotides ECD_01105 and ECD_01106 are separated by 226 nucleotides ECD_01106 and ECD_01107 are separated by 61 nucleotides
ECD_01103: ECD_01103 - beta N-acetyl-glucosaminidase, at 1,166,662 to 1,167,687
_01103
ECD_01104: ECD_01104 - putative UPF0227 family esterase, at 1,167,710 to 1,168,252
_01104
ECD_01105: ECD_01105 - respiratory NADH dehydrogenase 2/cupric reductase, at 1,168,660 to 1,169,964
_01105
ECD_01106: ECD_01106 - uncharacterized protein, at 1,170,191 to 1,170,730
_01106
ECD_01107: ECD_01107 - repressor for bhsA(ycfR), at 1,170,792 to 1,171,424
_01107
Position (kb)
1168
1169
1170 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1167.697 kb on - strand at 1167.795 kb on + strand, within ECD_01104 at 1167.804 kb on + strand, within ECD_01104 at 1168.417 kb on - strand at 1168.767 kb on + strand at 1169.207 kb on + strand, within ECD_01105 at 1169.291 kb on + strand, within ECD_01105 at 1169.300 kb on + strand, within ECD_01105 at 1169.316 kb on + strand, within ECD_01105 at 1169.340 kb on + strand, within ECD_01105 at 1169.340 kb on + strand, within ECD_01105 at 1169.341 kb on - strand, within ECD_01105 at 1169.529 kb on + strand, within ECD_01105 at 1169.590 kb on + strand, within ECD_01105 at 1169.691 kb on + strand, within ECD_01105 at 1169.846 kb on + strand at 1169.848 kb on + strand at 1169.850 kb on + strand at 1169.850 kb on + strand at 1169.860 kb on + strand at 1169.906 kb on + strand at 1169.925 kb on + strand at 1169.971 kb on + strand at 1170.019 kb on + strand at 1170.894 kb on - strand, within ECD_01107
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 1,167,697 - +4.7 1,167,795 + ECD_01104 0.16 +2.4 1,167,804 + ECD_01104 0.17 -0.3 1,168,417 - +0.2 1,168,767 + +0.3 1,169,207 + ECD_01105 0.42 -0.3 1,169,291 + ECD_01105 0.48 -1.1 1,169,300 + ECD_01105 0.49 +0.4 1,169,316 + ECD_01105 0.50 -1.4 1,169,340 + ECD_01105 0.52 -0.5 1,169,340 + ECD_01105 0.52 -0.7 1,169,341 - ECD_01105 0.52 -0.8 1,169,529 + ECD_01105 0.67 -1.8 1,169,590 + ECD_01105 0.71 -1.5 1,169,691 + ECD_01105 0.79 -2.6 1,169,846 + -0.7 1,169,848 + +0.3 1,169,850 + +1.1 1,169,850 + -0.9 1,169,860 + -0.9 1,169,906 + +1.8 1,169,925 + +0.0 1,169,971 + -0.2 1,170,019 + +1.6 1,170,894 - ECD_01107 0.16 -0.7
Or see this region's nucleotide sequence