Strain Fitness in Escherichia coli BL21 around ECD_01042

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01039 and ECD_01040 are separated by 58 nucleotidesECD_01040 and ECD_01041 are separated by 120 nucleotidesECD_01041 and ECD_01042 are separated by 94 nucleotidesECD_01042 and ECD_01043 are separated by 1 nucleotides ECD_01039: ECD_01039 - curlin subunit, amyloid curli fibers, cryptic, at 1,107,014 to 1,107,469 _01039 ECD_01040: ECD_01040 - curli assembly protein, at 1,107,528 to 1,107,860 _01040 ECD_01041: ECD_01041 - uncharacterized protein, at 1,107,981 to 1,108,292 _01041 ECD_01042: ECD_01042 - O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit, at 1,108,387 to 1,108,920 _01042 ECD_01043: ECD_01043 - stationary phase cardiolipin synthase 3, at 1,108,922 to 1,110,343 _01043 Position (kb) 1108 1109Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1107.471 kb on - strandat 1107.575 kb on + strand, within ECD_01040at 1107.601 kb on - strand, within ECD_01040at 1107.627 kb on - strand, within ECD_01040at 1107.931 kb on - strandat 1108.160 kb on + strand, within ECD_01041at 1108.287 kb on - strandat 1108.419 kb on + strandat 1108.422 kb on + strandat 1108.587 kb on + strand, within ECD_01042at 1108.588 kb on - strand, within ECD_01042at 1108.724 kb on - strand, within ECD_01042at 1109.069 kb on + strand, within ECD_01043at 1109.069 kb on + strand, within ECD_01043at 1109.070 kb on - strand, within ECD_01043at 1109.070 kb on - strand, within ECD_01043at 1109.086 kb on + strand, within ECD_01043at 1109.274 kb on - strand, within ECD_01043at 1109.275 kb on + strand, within ECD_01043at 1109.276 kb on - strand, within ECD_01043at 1109.783 kb on + strand, within ECD_01043

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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1,107,471 - +1.3
1,107,575 + ECD_01040 0.14 -1.0
1,107,601 - ECD_01040 0.22 +1.1
1,107,627 - ECD_01040 0.30 +1.7
1,107,931 - +1.7
1,108,160 + ECD_01041 0.57 +1.7
1,108,287 - +3.7
1,108,419 + -2.1
1,108,422 + -0.3
1,108,587 + ECD_01042 0.37 -0.1
1,108,588 - ECD_01042 0.38 -1.1
1,108,724 - ECD_01042 0.63 -1.7
1,109,069 + ECD_01043 0.10 -1.1
1,109,069 + ECD_01043 0.10 +0.8
1,109,070 - ECD_01043 0.10 -0.7
1,109,070 - ECD_01043 0.10 -0.8
1,109,086 + ECD_01043 0.12 -0.5
1,109,274 - ECD_01043 0.25 -0.7
1,109,275 + ECD_01043 0.25 -1.2
1,109,276 - ECD_01043 0.25 -0.9
1,109,783 + ECD_01043 0.61 +0.4

Or see this region's nucleotide sequence