Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01018 and ECD_01019 are separated by 533 nucleotides ECD_01019 and ECD_01020 are separated by 57 nucleotides
ECD_01018: ECD_01018 - proline:sodium symporter, at 1,083,587 to 1,085,095
_01018
ECD_01019: ECD_01019 - putative membrane protein, at 1,085,629 to 1,086,468
_01019
ECD_01020: ECD_01020 - inactive ferrous ion transporter EfeUOB, at 1,086,526 to 1,087,653
_01020
Position (kb)
1085
1086
1087 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1084.656 kb on + strand, within ECD_01018 at 1084.963 kb on + strand at 1084.993 kb on + strand at 1085.057 kb on + strand at 1085.283 kb on - strand at 1085.337 kb on + strand at 1085.338 kb on - strand at 1085.602 kb on + strand at 1085.658 kb on + strand at 1085.659 kb on - strand at 1085.710 kb on + strand at 1085.710 kb on + strand at 1086.114 kb on + strand, within ECD_01019 at 1086.291 kb on + strand, within ECD_01019 at 1086.473 kb on + strand at 1086.473 kb on + strand at 1086.516 kb on + strand at 1086.825 kb on + strand, within ECD_01020 at 1086.940 kb on + strand, within ECD_01020 at 1086.940 kb on + strand, within ECD_01020 at 1086.949 kb on + strand, within ECD_01020 at 1086.949 kb on + strand, within ECD_01020 at 1086.949 kb on + strand, within ECD_01020 at 1087.064 kb on - strand, within ECD_01020 at 1087.244 kb on - strand, within ECD_01020 at 1087.245 kb on + strand, within ECD_01020 at 1087.245 kb on + strand, within ECD_01020 at 1087.404 kb on + strand, within ECD_01020
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 1,084,656 + ECD_01018 0.71 +0.0 1,084,963 + +0.9 1,084,993 + +1.6 1,085,057 + -1.3 1,085,283 - +2.2 1,085,337 + +1.8 1,085,338 - -1.0 1,085,602 + -1.2 1,085,658 + -1.6 1,085,659 - +1.0 1,085,710 + +0.9 1,085,710 + +0.5 1,086,114 + ECD_01019 0.58 -0.5 1,086,291 + ECD_01019 0.79 +2.3 1,086,473 + -1.5 1,086,473 + -0.7 1,086,516 + +1.6 1,086,825 + ECD_01020 0.27 -2.8 1,086,940 + ECD_01020 0.37 +2.4 1,086,940 + ECD_01020 0.37 +1.9 1,086,949 + ECD_01020 0.38 -0.3 1,086,949 + ECD_01020 0.38 -1.1 1,086,949 + ECD_01020 0.38 -0.8 1,087,064 - ECD_01020 0.48 -0.5 1,087,244 - ECD_01020 0.64 -0.5 1,087,245 + ECD_01020 0.64 +1.0 1,087,245 + ECD_01020 0.64 -0.7 1,087,404 + ECD_01020 0.78 +1.1
Or see this region's nucleotide sequence