Strain Fitness in Escherichia coli BL21 around ECD_00999

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00997 and ECD_00998 overlap by 28 nucleotidesECD_00998 and ECD_00999 are separated by 129 nucleotidesECD_00999 and ECD_01000 overlap by 1 nucleotides ECD_00997: ECD_00997 - periplasmic sensory protein associated with the TorRS two-component regulatory system, at 1,060,549 to 1,061,577 _00997 ECD_00998: ECD_00998 - response regulator in two-component regulatory system with TorS, at 1,061,550 to 1,062,242 _00998 ECD_00999: ECD_00999 - trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit, at 1,062,372 to 1,063,544 _00999 ECD_01000: ECD_01000 - trimethylamine N-oxide (TMAO) reductase I, catalytic subunit, at 1,063,544 to 1,066,090 _01000 Position (kb) 1062 1063 1064Strain fitness (log2 ratio) -2 -1 0 1 2at 1061.691 kb on - strand, within ECD_00998at 1062.015 kb on - strand, within ECD_00998at 1062.190 kb on - strandat 1062.190 kb on - strandat 1062.333 kb on - strandat 1062.469 kb on + strandat 1062.470 kb on - strandat 1062.531 kb on - strand, within ECD_00999at 1062.531 kb on - strand, within ECD_00999at 1062.552 kb on + strand, within ECD_00999at 1062.555 kb on - strand, within ECD_00999at 1062.614 kb on + strand, within ECD_00999at 1062.702 kb on - strand, within ECD_00999at 1062.797 kb on + strand, within ECD_00999at 1063.148 kb on - strand, within ECD_00999at 1063.605 kb on + strandat 1063.825 kb on - strand, within ECD_01000at 1063.876 kb on + strand, within ECD_01000at 1064.294 kb on + strand, within ECD_01000at 1064.304 kb on + strand, within ECD_01000at 1064.452 kb on + strand, within ECD_01000at 1064.452 kb on + strand, within ECD_01000at 1064.453 kb on - strand, within ECD_01000at 1064.460 kb on - strand, within ECD_01000at 1064.498 kb on + strand, within ECD_01000at 1064.498 kb on + strand, within ECD_01000at 1064.498 kb on + strand, within ECD_01000

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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1,061,691 - ECD_00998 0.20 +2.3
1,062,015 - ECD_00998 0.67 -0.2
1,062,190 - +1.0
1,062,190 - +0.2
1,062,333 - -1.0
1,062,469 + +2.0
1,062,470 - -0.6
1,062,531 - ECD_00999 0.14 +0.5
1,062,531 - ECD_00999 0.14 -2.1
1,062,552 + ECD_00999 0.15 +0.9
1,062,555 - ECD_00999 0.16 -1.3
1,062,614 + ECD_00999 0.21 -1.0
1,062,702 - ECD_00999 0.28 -1.6
1,062,797 + ECD_00999 0.36 -0.6
1,063,148 - ECD_00999 0.66 -0.9
1,063,605 + -0.8
1,063,825 - ECD_01000 0.11 -1.4
1,063,876 + ECD_01000 0.13 -0.9
1,064,294 + ECD_01000 0.29 +2.0
1,064,304 + ECD_01000 0.30 -0.5
1,064,452 + ECD_01000 0.36 +0.7
1,064,452 + ECD_01000 0.36 -0.8
1,064,453 - ECD_01000 0.36 +0.1
1,064,460 - ECD_01000 0.36 +0.8
1,064,498 + ECD_01000 0.37 +1.7
1,064,498 + ECD_01000 0.37 +1.2
1,064,498 + ECD_01000 0.37 -1.3

Or see this region's nucleotide sequence