Strain Fitness in Escherichia coli BL21 around ECD_00987

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00986 and ECD_00987 are separated by 45 nucleotidesECD_00987 and ECD_00988 overlap by 1 nucleotidesECD_00988 and ECD_00989 overlap by 4 nucleotides ECD_00986: ECD_00986 - putative O-antigen capsule outer membrane auxillary protein export channel, at 1,049,753 to 1,050,892 _00986 ECD_00987: ECD_00987 - putative O-antigen capsule production periplasmic protein, at 1,050,938 to 1,053,034 _00987 ECD_00988: ECD_00988 - putative O-antigen capsule production periplasmic protein, at 1,053,034 to 1,053,780 _00988 ECD_00989: ECD_00989 - O-antigen capsule production lipoprotein, at 1,053,777 to 1,054,421 _00989 Position (kb) 1050 1051 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1050.373 kb on - strand, within ECD_00986at 1050.504 kb on + strand, within ECD_00986at 1050.646 kb on - strand, within ECD_00986at 1050.646 kb on - strand, within ECD_00986at 1050.763 kb on - strand, within ECD_00986at 1050.829 kb on + strandat 1050.829 kb on + strandat 1050.830 kb on - strandat 1051.109 kb on - strandat 1051.139 kb on + strandat 1051.139 kb on + strandat 1051.139 kb on + strandat 1051.359 kb on + strand, within ECD_00987at 1051.360 kb on - strand, within ECD_00987at 1051.360 kb on - strand, within ECD_00987at 1051.455 kb on + strand, within ECD_00987at 1051.456 kb on - strand, within ECD_00987at 1051.597 kb on + strand, within ECD_00987at 1051.617 kb on + strand, within ECD_00987at 1051.755 kb on + strand, within ECD_00987at 1052.038 kb on + strand, within ECD_00987at 1052.039 kb on - strand, within ECD_00987at 1052.039 kb on - strand, within ECD_00987at 1052.039 kb on - strand, within ECD_00987at 1052.040 kb on + strand, within ECD_00987at 1052.040 kb on + strand, within ECD_00987at 1052.041 kb on - strand, within ECD_00987at 1052.041 kb on - strand, within ECD_00987at 1052.091 kb on + strand, within ECD_00987at 1052.092 kb on - strand, within ECD_00987at 1052.253 kb on + strand, within ECD_00987at 1052.404 kb on - strand, within ECD_00987at 1052.494 kb on - strand, within ECD_00987at 1052.721 kb on + strand, within ECD_00987at 1052.722 kb on - strand, within ECD_00987at 1052.755 kb on + strand, within ECD_00987at 1052.757 kb on + strand, within ECD_00987at 1053.012 kb on - strandat 1053.208 kb on - strand, within ECD_00988at 1053.331 kb on - strand, within ECD_00988at 1053.331 kb on - strand, within ECD_00988at 1053.333 kb on + strand, within ECD_00988at 1053.355 kb on - strand, within ECD_00988at 1053.357 kb on - strand, within ECD_00988at 1053.407 kb on - strand, within ECD_00988

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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1,050,373 - ECD_00986 0.54 -0.4
1,050,504 + ECD_00986 0.66 +1.2
1,050,646 - ECD_00986 0.78 -1.5
1,050,646 - ECD_00986 0.78 -1.2
1,050,763 - ECD_00986 0.89 +0.1
1,050,829 + +0.8
1,050,829 + -1.4
1,050,830 - +2.2
1,051,109 - -0.4
1,051,139 + -0.6
1,051,139 + -1.0
1,051,139 + +0.3
1,051,359 + ECD_00987 0.20 +0.1
1,051,360 - ECD_00987 0.20 -1.3
1,051,360 - ECD_00987 0.20 -0.6
1,051,455 + ECD_00987 0.25 -1.9
1,051,456 - ECD_00987 0.25 +0.3
1,051,597 + ECD_00987 0.31 -1.0
1,051,617 + ECD_00987 0.32 -2.4
1,051,755 + ECD_00987 0.39 +0.1
1,052,038 + ECD_00987 0.52 +0.5
1,052,039 - ECD_00987 0.53 -1.0
1,052,039 - ECD_00987 0.53 +2.2
1,052,039 - ECD_00987 0.53 -2.0
1,052,040 + ECD_00987 0.53 -1.0
1,052,040 + ECD_00987 0.53 -0.2
1,052,041 - ECD_00987 0.53 -0.7
1,052,041 - ECD_00987 0.53 -1.9
1,052,091 + ECD_00987 0.55 -0.8
1,052,092 - ECD_00987 0.55 -0.2
1,052,253 + ECD_00987 0.63 -0.5
1,052,404 - ECD_00987 0.70 -0.3
1,052,494 - ECD_00987 0.74 +2.2
1,052,721 + ECD_00987 0.85 -1.7
1,052,722 - ECD_00987 0.85 +1.3
1,052,755 + ECD_00987 0.87 -1.3
1,052,757 + ECD_00987 0.87 +2.4
1,053,012 - -0.5
1,053,208 - ECD_00988 0.23 +1.2
1,053,331 - ECD_00988 0.40 -0.5
1,053,331 - ECD_00988 0.40 +0.7
1,053,333 + ECD_00988 0.40 +3.5
1,053,355 - ECD_00988 0.43 +2.7
1,053,357 - ECD_00988 0.43 +0.9
1,053,407 - ECD_00988 0.50 +0.7

Or see this region's nucleotide sequence