Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00401 and ECD_00402 are separated by 180 nucleotides ECD_00402 and ECD_00403 are separated by 29 nucleotides
ECD_00401: ECD_00401 - putative multidrug ABC transporter ATPase, at 439,682 to 441,463
_00401
ECD_00402: ECD_00402 - nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB, at 441,644 to 441,982
_00402
ECD_00403: ECD_00403 - ammonium transporter, at 442,012 to 443,298
_00403
Position (kb) 441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.666 kb on + strand, within ECD_00401 at 440.762 kb on - strand, within ECD_00401 at 440.838 kb on + strand, within ECD_00401 at 440.895 kb on + strand, within ECD_00401 at 440.904 kb on + strand, within ECD_00401 at 440.904 kb on + strand, within ECD_00401 at 441.001 kb on + strand, within ECD_00401 at 441.001 kb on + strand, within ECD_00401 at 441.076 kb on + strand, within ECD_00401 at 441.080 kb on + strand, within ECD_00401 at 441.080 kb on + strand, within ECD_00401 at 441.256 kb on + strand, within ECD_00401 at 441.257 kb on - strand, within ECD_00401 at 441.395 kb on + strand at 441.395 kb on + strand at 441.395 kb on + strand at 441.396 kb on - strand at 441.396 kb on - strand at 441.396 kb on - strand at 441.517 kb on + strand at 441.518 kb on - strand at 441.594 kb on - strand at 441.643 kb on + strand at 441.644 kb on - strand at 441.644 kb on - strand at 441.644 kb on - strand at 441.715 kb on + strand, within ECD_00402 at 441.794 kb on + strand, within ECD_00402 at 442.113 kb on + strand at 442.262 kb on - strand, within ECD_00403 at 442.363 kb on + strand, within ECD_00403 at 442.369 kb on + strand, within ECD_00403 at 442.369 kb on + strand, within ECD_00403 at 442.495 kb on + strand, within ECD_00403 at 442.495 kb on + strand, within ECD_00403 at 442.581 kb on + strand, within ECD_00403 at 442.702 kb on + strand, within ECD_00403 at 442.702 kb on + strand, within ECD_00403 at 442.703 kb on - strand, within ECD_00403 at 442.703 kb on - strand, within ECD_00403 at 442.839 kb on + strand, within ECD_00403 at 442.909 kb on + strand, within ECD_00403 at 442.947 kb on - strand, within ECD_00403 at 442.977 kb on + strand, within ECD_00403 at 442.977 kb on + strand, within ECD_00403 at 442.978 kb on - strand, within ECD_00403
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 440,666 + ECD_00401 0.55 +0.6 440,762 - ECD_00401 0.61 +1.2 440,838 + ECD_00401 0.65 +1.0 440,895 + ECD_00401 0.68 -0.6 440,904 + ECD_00401 0.69 +0.0 440,904 + ECD_00401 0.69 +1.4 441,001 + ECD_00401 0.74 -0.6 441,001 + ECD_00401 0.74 +0.3 441,076 + ECD_00401 0.78 +0.6 441,080 + ECD_00401 0.78 +1.4 441,080 + ECD_00401 0.78 -1.8 441,256 + ECD_00401 0.88 +1.2 441,257 - ECD_00401 0.88 -1.1 441,395 + -2.2 441,395 + -3.4 441,395 + +0.2 441,396 - -0.7 441,396 - -1.3 441,396 - +1.0 441,517 + -1.2 441,518 - -0.3 441,594 - -0.8 441,643 + +0.4 441,644 - +2.3 441,644 - -1.4 441,644 - -1.5 441,715 + ECD_00402 0.21 -1.0 441,794 + ECD_00402 0.44 -2.5 442,113 + +0.0 442,262 - ECD_00403 0.19 +0.0 442,363 + ECD_00403 0.27 -0.2 442,369 + ECD_00403 0.28 -1.1 442,369 + ECD_00403 0.28 +0.2 442,495 + ECD_00403 0.38 -0.8 442,495 + ECD_00403 0.38 +1.4 442,581 + ECD_00403 0.44 +0.2 442,702 + ECD_00403 0.54 +1.6 442,702 + ECD_00403 0.54 -1.6 442,703 - ECD_00403 0.54 -2.5 442,703 - ECD_00403 0.54 -2.8 442,839 + ECD_00403 0.64 -0.1 442,909 + ECD_00403 0.70 +0.5 442,947 - ECD_00403 0.73 +1.6 442,977 + ECD_00403 0.75 -1.8 442,977 + ECD_00403 0.75 -0.1 442,978 - ECD_00403 0.75 +0.0
Or see this region's nucleotide sequence