Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00379 and ECD_00380 are separated by 11 nucleotides ECD_00380 and ECD_00381 overlap by 1 nucleotides ECD_00381 and ECD_00382 overlap by 11 nucleotides ECD_00382 and ECD_00383 are separated by 21 nucleotides
ECD_00379: ECD_00379 - protoheme IX farnesyltransferase, at 414,497 to 415,387
_00379
ECD_00380: ECD_00380 - cytochrome o ubiquinol oxidase subunit IV, at 415,399 to 415,728
_00380
ECD_00381: ECD_00381 - cytochrome o ubiquinol oxidase subunit III, at 415,728 to 416,342
_00381
ECD_00382: ECD_00382 - cytochrome o ubiquinol oxidase subunit I, at 416,332 to 418,323
_00382
ECD_00383: ECD_00383 - cytochrome o ubiquinol oxidase subunit II, at 418,345 to 419,292
_00383
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 415.379 kb on - strand at 415.401 kb on - strand at 415.401 kb on - strand at 415.401 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.451 kb on - strand, within ECD_00380 at 415.716 kb on + strand at 415.716 kb on + strand at 415.729 kb on + strand at 415.730 kb on - strand at 415.730 kb on - strand at 415.858 kb on - strand, within ECD_00381 at 416.049 kb on - strand, within ECD_00381 at 416.071 kb on + strand, within ECD_00381 at 416.072 kb on - strand, within ECD_00381 at 416.072 kb on - strand, within ECD_00381 at 416.096 kb on - strand, within ECD_00381 at 416.162 kb on + strand, within ECD_00381 at 416.204 kb on - strand, within ECD_00381 at 416.204 kb on - strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.208 kb on - strand, within ECD_00381 at 416.330 kb on + strand at 416.358 kb on + strand at 416.359 kb on - strand at 416.361 kb on + strand at 416.362 kb on - strand at 416.414 kb on + strand at 416.415 kb on - strand at 416.415 kb on - strand at 416.415 kb on - strand at 416.417 kb on + strand at 416.496 kb on + strand at 416.572 kb on - strand, within ECD_00382 at 416.601 kb on + strand, within ECD_00382 at 416.603 kb on + strand, within ECD_00382 at 416.604 kb on - strand, within ECD_00382 at 416.676 kb on - strand, within ECD_00382 at 416.775 kb on - strand, within ECD_00382 at 416.920 kb on - strand, within ECD_00382 at 416.920 kb on - strand, within ECD_00382 at 417.212 kb on + strand, within ECD_00382 at 417.212 kb on + strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.358 kb on - strand, within ECD_00382 at 417.384 kb on + strand, within ECD_00382 at 417.500 kb on + strand, within ECD_00382 at 417.500 kb on + strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.552 kb on - strand, within ECD_00382 at 417.606 kb on + strand, within ECD_00382 at 417.614 kb on - strand, within ECD_00382 at 417.728 kb on - strand, within ECD_00382 at 417.728 kb on - strand, within ECD_00382 at 417.730 kb on - strand, within ECD_00382 at 417.782 kb on + strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.880 kb on - strand, within ECD_00382 at 417.893 kb on - strand, within ECD_00382 at 417.997 kb on - strand, within ECD_00382 at 417.997 kb on - strand, within ECD_00382 at 418.028 kb on + strand, within ECD_00382 at 418.140 kb on + strand at 418.140 kb on + strand at 418.140 kb on + strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.142 kb on + strand at 418.142 kb on + strand at 418.142 kb on + strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.162 kb on - strand at 418.196 kb on + strand at 418.197 kb on - strand at 418.197 kb on - strand at 418.214 kb on + strand at 418.214 kb on + strand at 418.279 kb on - strand at 418.279 kb on - strand at 418.327 kb on + strand at 418.450 kb on - strand, within ECD_00383 at 418.499 kb on + strand, within ECD_00383 at 418.514 kb on + strand, within ECD_00383 at 418.515 kb on - strand, within ECD_00383 at 418.626 kb on + strand, within ECD_00383 at 418.626 kb on + strand, within ECD_00383 at 418.627 kb on - strand, within ECD_00383 at 418.627 kb on - strand, within ECD_00383 at 418.677 kb on + strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 419.000 kb on - strand, within ECD_00383 at 419.000 kb on - strand, within ECD_00383 at 419.004 kb on + strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.009 kb on - strand, within ECD_00383 at 419.060 kb on + strand, within ECD_00383 at 419.061 kb on - strand, within ECD_00383 at 419.061 kb on - strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.065 kb on - strand, within ECD_00383 at 419.204 kb on - strand at 419.234 kb on - strand at 419.234 kb on - strand at 419.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 415,379 - -0.9 415,401 - -0.0 415,401 - -0.9 415,401 - +1.7 415,419 - +1.5 415,419 - +0.1 415,419 - -2.4 415,419 - +1.2 415,451 - ECD_00380 0.16 -0.8 415,716 + -1.7 415,716 + -2.3 415,729 + -0.3 415,730 - +2.5 415,730 - +1.1 415,858 - ECD_00381 0.21 +1.5 416,049 - ECD_00381 0.52 +1.8 416,071 + ECD_00381 0.56 -0.4 416,072 - ECD_00381 0.56 +0.9 416,072 - ECD_00381 0.56 -1.1 416,096 - ECD_00381 0.60 +1.2 416,162 + ECD_00381 0.71 -0.4 416,204 - ECD_00381 0.77 -1.2 416,204 - ECD_00381 0.77 +0.1 416,207 + ECD_00381 0.78 -2.6 416,207 + ECD_00381 0.78 +0.7 416,207 + ECD_00381 0.78 -0.2 416,208 - ECD_00381 0.78 +1.2 416,330 + +0.8 416,358 + +1.2 416,359 - -1.4 416,361 + +0.3 416,362 - -0.0 416,414 + -0.1 416,415 - +0.5 416,415 - +1.2 416,415 - +0.3 416,417 + -1.4 416,496 + +1.3 416,572 - ECD_00382 0.12 -1.4 416,601 + ECD_00382 0.14 -2.2 416,603 + ECD_00382 0.14 +0.9 416,604 - ECD_00382 0.14 -1.4 416,676 - ECD_00382 0.17 -1.0 416,775 - ECD_00382 0.22 -2.7 416,920 - ECD_00382 0.30 -1.2 416,920 - ECD_00382 0.30 +0.7 417,212 + ECD_00382 0.44 +0.1 417,212 + ECD_00382 0.44 -0.2 417,213 - ECD_00382 0.44 +2.3 417,213 - ECD_00382 0.44 -0.8 417,213 - ECD_00382 0.44 +0.4 417,213 - ECD_00382 0.44 +2.1 417,213 - ECD_00382 0.44 +0.7 417,213 - ECD_00382 0.44 -1.1 417,213 - ECD_00382 0.44 -0.7 417,358 - ECD_00382 0.52 -0.8 417,384 + ECD_00382 0.53 -0.2 417,500 + ECD_00382 0.59 -0.0 417,500 + ECD_00382 0.59 -1.3 417,501 - ECD_00382 0.59 +1.0 417,501 - ECD_00382 0.59 +2.1 417,501 - ECD_00382 0.59 +2.0 417,501 - ECD_00382 0.59 +0.8 417,501 - ECD_00382 0.59 +0.3 417,501 - ECD_00382 0.59 +0.4 417,501 - ECD_00382 0.59 -1.6 417,501 - ECD_00382 0.59 -1.2 417,552 - ECD_00382 0.61 -1.8 417,606 + ECD_00382 0.64 -0.4 417,614 - ECD_00382 0.64 +0.7 417,728 - ECD_00382 0.70 +0.2 417,728 - ECD_00382 0.70 +1.6 417,730 - ECD_00382 0.70 +0.8 417,782 + ECD_00382 0.73 -0.9 417,783 - ECD_00382 0.73 -2.3 417,783 - ECD_00382 0.73 +1.1 417,783 - ECD_00382 0.73 -1.8 417,880 - ECD_00382 0.78 +0.7 417,893 - ECD_00382 0.78 +1.5 417,997 - ECD_00382 0.84 -1.4 417,997 - ECD_00382 0.84 -1.0 418,028 + ECD_00382 0.85 +0.1 418,140 + +0.8 418,140 + -1.1 418,140 + -0.6 418,141 - -2.8 418,141 - -0.8 418,141 - -0.5 418,141 - -2.6 418,141 - +0.2 418,141 - +0.9 418,142 + -1.2 418,142 + +0.2 418,142 + -1.0 418,143 - +0.3 418,143 - -1.4 418,143 - -1.8 418,143 - -1.9 418,143 - +2.3 418,143 - +0.3 418,143 - -0.6 418,143 - +0.0 418,143 - +0.5 418,143 - +0.1 418,162 - +0.4 418,196 + +0.3 418,197 - +1.8 418,197 - -0.6 418,214 + -2.6 418,214 + -2.0 418,279 - -0.7 418,279 - -0.2 418,327 + +1.8 418,450 - ECD_00383 0.11 +0.5 418,499 + ECD_00383 0.16 +1.8 418,514 + ECD_00383 0.18 -0.5 418,515 - ECD_00383 0.18 +1.0 418,626 + ECD_00383 0.30 -2.2 418,626 + ECD_00383 0.30 -0.2 418,627 - ECD_00383 0.30 +0.6 418,627 - ECD_00383 0.30 -1.4 418,677 + ECD_00383 0.35 -2.5 418,686 - ECD_00383 0.36 -1.4 418,686 - ECD_00383 0.36 -0.6 418,686 - ECD_00383 0.36 +1.3 418,686 - ECD_00383 0.36 +0.8 418,686 - ECD_00383 0.36 +0.7 419,000 - ECD_00383 0.69 -1.4 419,000 - ECD_00383 0.69 +0.4 419,004 + ECD_00383 0.70 +2.2 419,005 - ECD_00383 0.70 +2.0 419,005 - ECD_00383 0.70 -1.0 419,005 - ECD_00383 0.70 +2.1 419,009 - ECD_00383 0.70 -1.2 419,060 + ECD_00383 0.75 +1.1 419,061 - ECD_00383 0.76 +1.2 419,061 - ECD_00383 0.76 -2.3 419,064 + ECD_00383 0.76 -0.9 419,064 + ECD_00383 0.76 -1.5 419,064 + ECD_00383 0.76 -0.5 419,065 - ECD_00383 0.76 -0.7 419,204 - -2.9 419,234 - -1.0 419,234 - -1.6 419,249 - +0.1
Or see this region's nucleotide sequence