Strain Fitness in Escherichia coli BL21 around ECD_00359

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00357 and ECD_00358 are separated by 127 nucleotidesECD_00358 and ECD_00359 are separated by 176 nucleotidesECD_00359 and ECD_00360 are separated by 298 nucleotidesECD_00360 and ECD_00361 are separated by 150 nucleotides ECD_00357: ECD_00357 - SecYEG protein translocase auxillary subunit, at 394,907 to 395,878 _00357 ECD_00358: ECD_00358 - HNH nuclease family protein, at 396,006 to 396,353 _00358 ECD_00359: ECD_00359 - nucleoside channel, receptor of phage T6 and colicin K, at 396,530 to 397,414 _00359 ECD_00360: ECD_00360 - putative lipoprotein, at 397,713 to 398,252 _00360 ECD_00361: ECD_00361 - Nrd regulon repressor, at 398,403 to 398,852 _00361 Position (kb) 396 397 398Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 395.934 kb on + strandat 395.983 kb on - strandat 396.132 kb on - strand, within ECD_00358at 396.232 kb on - strand, within ECD_00358at 396.250 kb on - strand, within ECD_00358at 396.307 kb on - strand, within ECD_00358at 396.307 kb on - strand, within ECD_00358at 396.355 kb on + strandat 396.411 kb on + strandat 396.412 kb on - strandat 396.540 kb on + strandat 396.545 kb on + strandat 396.555 kb on + strandat 396.654 kb on - strand, within ECD_00359at 396.715 kb on + strand, within ECD_00359at 396.715 kb on + strand, within ECD_00359at 396.716 kb on - strand, within ECD_00359at 396.716 kb on - strand, within ECD_00359at 396.719 kb on - strand, within ECD_00359at 396.730 kb on + strand, within ECD_00359at 396.730 kb on + strand, within ECD_00359at 396.731 kb on - strand, within ECD_00359at 396.734 kb on - strand, within ECD_00359at 396.801 kb on + strand, within ECD_00359at 396.802 kb on - strand, within ECD_00359at 396.844 kb on - strand, within ECD_00359at 397.004 kb on - strand, within ECD_00359at 397.004 kb on - strand, within ECD_00359at 397.021 kb on - strand, within ECD_00359at 397.026 kb on + strand, within ECD_00359at 397.026 kb on + strand, within ECD_00359at 397.042 kb on - strand, within ECD_00359at 397.067 kb on - strand, within ECD_00359at 397.067 kb on - strand, within ECD_00359at 397.197 kb on + strand, within ECD_00359at 397.197 kb on + strand, within ECD_00359at 397.197 kb on + strand, within ECD_00359at 397.198 kb on - strand, within ECD_00359at 397.198 kb on - strand, within ECD_00359at 397.198 kb on - strand, within ECD_00359at 397.198 kb on - strand, within ECD_00359at 397.242 kb on + strand, within ECD_00359at 397.243 kb on - strand, within ECD_00359at 397.243 kb on - strand, within ECD_00359at 397.246 kb on + strand, within ECD_00359at 397.281 kb on + strand, within ECD_00359at 397.418 kb on + strandat 397.419 kb on - strandat 397.419 kb on - strandat 397.419 kb on - strandat 397.419 kb on - strandat 397.631 kb on + strandat 397.832 kb on + strand, within ECD_00360at 397.873 kb on - strand, within ECD_00360at 397.894 kb on + strand, within ECD_00360at 397.895 kb on - strand, within ECD_00360at 397.947 kb on - strand, within ECD_00360at 397.950 kb on + strand, within ECD_00360at 397.950 kb on + strand, within ECD_00360at 397.951 kb on - strand, within ECD_00360at 397.951 kb on - strand, within ECD_00360at 397.951 kb on - strand, within ECD_00360at 397.974 kb on - strand, within ECD_00360at 397.982 kb on + strand, within ECD_00360at 397.982 kb on + strand, within ECD_00360at 397.985 kb on + strand, within ECD_00360at 397.986 kb on - strand, within ECD_00360at 398.001 kb on - strand, within ECD_00360at 398.001 kb on - strand, within ECD_00360at 398.004 kb on + strand, within ECD_00360at 398.005 kb on - strand, within ECD_00360at 398.005 kb on - strand, within ECD_00360at 398.060 kb on - strand, within ECD_00360at 398.246 kb on + strandat 398.247 kb on - strandat 398.252 kb on + strandat 398.252 kb on + strandat 398.282 kb on + strandat 398.283 kb on - strandat 398.288 kb on + strandat 398.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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395,934 + -0.3
395,983 - -2.2
396,132 - ECD_00358 0.36 +1.2
396,232 - ECD_00358 0.65 +1.5
396,250 - ECD_00358 0.70 -3.5
396,307 - ECD_00358 0.86 +1.4
396,307 - ECD_00358 0.86 -2.1
396,355 + +0.5
396,411 + -1.5
396,412 - +0.1
396,540 + -1.0
396,545 + +0.3
396,555 + +1.0
396,654 - ECD_00359 0.14 +2.9
396,715 + ECD_00359 0.21 -0.1
396,715 + ECD_00359 0.21 +1.3
396,716 - ECD_00359 0.21 +2.1
396,716 - ECD_00359 0.21 +1.1
396,719 - ECD_00359 0.21 +2.5
396,730 + ECD_00359 0.23 +2.4
396,730 + ECD_00359 0.23 +2.0
396,731 - ECD_00359 0.23 +1.3
396,734 - ECD_00359 0.23 +3.3
396,801 + ECD_00359 0.31 +1.2
396,802 - ECD_00359 0.31 +1.8
396,844 - ECD_00359 0.35 +1.6
397,004 - ECD_00359 0.54 +2.7
397,004 - ECD_00359 0.54 +2.9
397,021 - ECD_00359 0.55 +2.2
397,026 + ECD_00359 0.56 +1.9
397,026 + ECD_00359 0.56 +0.6
397,042 - ECD_00359 0.58 +1.3
397,067 - ECD_00359 0.61 +1.9
397,067 - ECD_00359 0.61 +1.2
397,197 + ECD_00359 0.75 +0.7
397,197 + ECD_00359 0.75 -0.4
397,197 + ECD_00359 0.75 +1.9
397,198 - ECD_00359 0.75 +1.9
397,198 - ECD_00359 0.75 +0.3
397,198 - ECD_00359 0.75 +1.5
397,198 - ECD_00359 0.75 +3.2
397,242 + ECD_00359 0.80 +1.7
397,243 - ECD_00359 0.81 +1.6
397,243 - ECD_00359 0.81 +1.3
397,246 + ECD_00359 0.81 +0.1
397,281 + ECD_00359 0.85 +1.3
397,418 + +0.5
397,419 - +1.6
397,419 - -0.8
397,419 - -0.3
397,419 - +0.5
397,631 + -1.7
397,832 + ECD_00360 0.22 -1.0
397,873 - ECD_00360 0.30 +0.2
397,894 + ECD_00360 0.34 -1.4
397,895 - ECD_00360 0.34 +0.6
397,947 - ECD_00360 0.43 +0.7
397,950 + ECD_00360 0.44 +0.6
397,950 + ECD_00360 0.44 -2.0
397,951 - ECD_00360 0.44 -0.7
397,951 - ECD_00360 0.44 +1.7
397,951 - ECD_00360 0.44 +3.1
397,974 - ECD_00360 0.48 +0.9
397,982 + ECD_00360 0.50 -1.3
397,982 + ECD_00360 0.50 -0.3
397,985 + ECD_00360 0.50 -1.8
397,986 - ECD_00360 0.51 -1.9
398,001 - ECD_00360 0.53 +4.6
398,001 - ECD_00360 0.53 -2.6
398,004 + ECD_00360 0.54 -1.9
398,005 - ECD_00360 0.54 -2.3
398,005 - ECD_00360 0.54 +2.6
398,060 - ECD_00360 0.64 -1.2
398,246 + -1.6
398,247 - -0.8
398,252 + +1.1
398,252 + +0.3
398,282 + +0.1
398,283 - +2.0
398,288 + +1.2
398,364 + -1.8

Or see this region's nucleotide sequence