Strain Fitness in Escherichia coli BL21 around ECD_00109

Experiment: P2_phage_0.5625_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00108 and ECD_00109 are separated by 87 nucleotidesECD_00109 and ECD_00110 overlap by 4 nucleotidesECD_00110 and ECD_00111 are separated by 42 nucleotides ECD_00108: ECD_00108 - quinolinate phosphoribosyltransferase, at 120,557 to 121,450 _00108 ECD_00109: ECD_00109 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase, at 121,538 to 122,089 _00109 ECD_00110: ECD_00110 - ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation, at 122,086 to 122,940 _00110 ECD_00111: ECD_00111 - aromatic amino acid transporter, at 122,983 to 124,356 _00111 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 120.555 kb on + strandat 120.556 kb on - strandat 120.599 kb on - strandat 120.619 kb on + strandat 120.804 kb on - strand, within ECD_00108at 120.880 kb on + strand, within ECD_00108at 120.881 kb on - strand, within ECD_00108at 120.884 kb on - strand, within ECD_00108at 121.038 kb on + strand, within ECD_00108at 121.038 kb on + strand, within ECD_00108at 121.216 kb on + strand, within ECD_00108at 121.217 kb on - strand, within ECD_00108at 121.346 kb on + strand, within ECD_00108at 121.434 kb on + strandat 121.453 kb on + strandat 121.496 kb on - strandat 121.509 kb on + strandat 121.513 kb on - strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.523 kb on - strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.525 kb on - strandat 121.642 kb on + strand, within ECD_00109at 121.643 kb on - strand, within ECD_00109at 121.643 kb on - strand, within ECD_00109at 121.643 kb on - strand, within ECD_00109at 121.645 kb on + strand, within ECD_00109at 121.689 kb on + strand, within ECD_00109at 121.703 kb on - strand, within ECD_00109at 121.796 kb on + strand, within ECD_00109at 121.797 kb on - strand, within ECD_00109at 121.797 kb on - strand, within ECD_00109at 121.797 kb on - strand, within ECD_00109at 121.841 kb on + strand, within ECD_00109at 121.967 kb on + strand, within ECD_00109at 122.005 kb on + strand, within ECD_00109at 122.006 kb on - strand, within ECD_00109at 122.093 kb on + strandat 122.098 kb on - strandat 122.098 kb on - strandat 122.229 kb on + strand, within ECD_00110at 122.230 kb on - strand, within ECD_00110at 122.259 kb on - strand, within ECD_00110at 122.276 kb on + strand, within ECD_00110at 122.340 kb on + strand, within ECD_00110at 122.341 kb on - strand, within ECD_00110at 122.365 kb on + strand, within ECD_00110at 122.365 kb on + strand, within ECD_00110at 122.365 kb on + strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.385 kb on + strand, within ECD_00110at 122.385 kb on + strand, within ECD_00110at 122.503 kb on - strand, within ECD_00110at 122.669 kb on + strand, within ECD_00110at 122.705 kb on + strand, within ECD_00110at 122.705 kb on + strand, within ECD_00110at 122.706 kb on - strand, within ECD_00110at 122.706 kb on - strand, within ECD_00110at 122.707 kb on + strand, within ECD_00110at 122.707 kb on + strand, within ECD_00110at 122.707 kb on + strand, within ECD_00110at 122.707 kb on + strand, within ECD_00110at 122.708 kb on - strand, within ECD_00110at 122.708 kb on - strand, within ECD_00110at 122.782 kb on + strand, within ECD_00110at 122.945 kb on + strandat 122.962 kb on - strandat 122.976 kb on - strandat 123.034 kb on - strandat 123.037 kb on + strandat 123.037 kb on + strandat 123.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
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120,555 + +1.3
120,556 - -0.3
120,599 - +2.7
120,619 + -2.2
120,804 - ECD_00108 0.28 -2.0
120,880 + ECD_00108 0.36 -0.5
120,881 - ECD_00108 0.36 +2.3
120,884 - ECD_00108 0.37 +2.4
121,038 + ECD_00108 0.54 +1.2
121,038 + ECD_00108 0.54 -0.1
121,216 + ECD_00108 0.74 -0.9
121,217 - ECD_00108 0.74 -1.1
121,346 + ECD_00108 0.88 -1.4
121,434 + -0.2
121,453 + -0.3
121,496 - +2.4
121,509 + +0.7
121,513 - -0.9
121,522 + -1.5
121,522 + -0.7
121,522 + +1.0
121,522 + +1.6
121,522 + +1.5
121,523 - +2.0
121,524 + +4.0
121,524 + +0.5
121,524 + -1.9
121,524 + +1.3
121,524 + +2.0
121,524 + +1.2
121,524 + -2.8
121,525 - -0.5
121,642 + ECD_00109 0.19 -0.7
121,643 - ECD_00109 0.19 -2.4
121,643 - ECD_00109 0.19 +3.4
121,643 - ECD_00109 0.19 -2.6
121,645 + ECD_00109 0.19 +0.3
121,689 + ECD_00109 0.27 -0.3
121,703 - ECD_00109 0.30 -0.9
121,796 + ECD_00109 0.47 -1.3
121,797 - ECD_00109 0.47 +1.3
121,797 - ECD_00109 0.47 +0.2
121,797 - ECD_00109 0.47 +0.1
121,841 + ECD_00109 0.55 -3.3
121,967 + ECD_00109 0.78 +2.4
122,005 + ECD_00109 0.85 +1.8
122,006 - ECD_00109 0.85 -2.7
122,093 + -0.6
122,098 - -0.5
122,098 - -0.8
122,229 + ECD_00110 0.17 +0.2
122,230 - ECD_00110 0.17 -0.9
122,259 - ECD_00110 0.20 -1.5
122,276 + ECD_00110 0.22 +0.1
122,340 + ECD_00110 0.30 -3.5
122,341 - ECD_00110 0.30 -1.0
122,365 + ECD_00110 0.33 -0.9
122,365 + ECD_00110 0.33 -1.5
122,365 + ECD_00110 0.33 +0.8
122,366 - ECD_00110 0.33 +0.9
122,366 - ECD_00110 0.33 -1.0
122,366 - ECD_00110 0.33 -1.5
122,366 - ECD_00110 0.33 -2.7
122,385 + ECD_00110 0.35 +0.3
122,385 + ECD_00110 0.35 -1.4
122,503 - ECD_00110 0.49 +0.7
122,669 + ECD_00110 0.68 -1.2
122,705 + ECD_00110 0.72 -0.7
122,705 + ECD_00110 0.72 +1.5
122,706 - ECD_00110 0.73 +1.5
122,706 - ECD_00110 0.73 +2.4
122,707 + ECD_00110 0.73 -1.0
122,707 + ECD_00110 0.73 -1.0
122,707 + ECD_00110 0.73 +0.4
122,707 + ECD_00110 0.73 -0.8
122,708 - ECD_00110 0.73 -1.2
122,708 - ECD_00110 0.73 -1.4
122,782 + ECD_00110 0.81 +1.8
122,945 + -0.8
122,962 - +1.1
122,976 - -1.1
123,034 - +0.0
123,037 + -1.2
123,037 + -1.7
123,066 - +1.1

Or see this region's nucleotide sequence