Experiment: P2_phage_0.5625_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00108 and ECD_00109 are separated by 87 nucleotides ECD_00109 and ECD_00110 overlap by 4 nucleotides ECD_00110 and ECD_00111 are separated by 42 nucleotides
ECD_00108: ECD_00108 - quinolinate phosphoribosyltransferase, at 120,557 to 121,450
_00108
ECD_00109: ECD_00109 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase, at 121,538 to 122,089
_00109
ECD_00110: ECD_00110 - ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation, at 122,086 to 122,940
_00110
ECD_00111: ECD_00111 - aromatic amino acid transporter, at 122,983 to 124,356
_00111
Position (kb)
121
122
123 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 120.555 kb on + strand at 120.556 kb on - strand at 120.599 kb on - strand at 120.619 kb on + strand at 120.804 kb on - strand, within ECD_00108 at 120.880 kb on + strand, within ECD_00108 at 120.881 kb on - strand, within ECD_00108 at 120.884 kb on - strand, within ECD_00108 at 121.038 kb on + strand, within ECD_00108 at 121.038 kb on + strand, within ECD_00108 at 121.216 kb on + strand, within ECD_00108 at 121.217 kb on - strand, within ECD_00108 at 121.346 kb on + strand, within ECD_00108 at 121.434 kb on + strand at 121.453 kb on + strand at 121.496 kb on - strand at 121.509 kb on + strand at 121.513 kb on - strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.523 kb on - strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.525 kb on - strand at 121.642 kb on + strand, within ECD_00109 at 121.643 kb on - strand, within ECD_00109 at 121.643 kb on - strand, within ECD_00109 at 121.643 kb on - strand, within ECD_00109 at 121.645 kb on + strand, within ECD_00109 at 121.689 kb on + strand, within ECD_00109 at 121.703 kb on - strand, within ECD_00109 at 121.796 kb on + strand, within ECD_00109 at 121.797 kb on - strand, within ECD_00109 at 121.797 kb on - strand, within ECD_00109 at 121.797 kb on - strand, within ECD_00109 at 121.841 kb on + strand, within ECD_00109 at 121.967 kb on + strand, within ECD_00109 at 122.005 kb on + strand, within ECD_00109 at 122.006 kb on - strand, within ECD_00109 at 122.093 kb on + strand at 122.098 kb on - strand at 122.098 kb on - strand at 122.229 kb on + strand, within ECD_00110 at 122.230 kb on - strand, within ECD_00110 at 122.259 kb on - strand, within ECD_00110 at 122.276 kb on + strand, within ECD_00110 at 122.340 kb on + strand, within ECD_00110 at 122.341 kb on - strand, within ECD_00110 at 122.365 kb on + strand, within ECD_00110 at 122.365 kb on + strand, within ECD_00110 at 122.365 kb on + strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.385 kb on + strand, within ECD_00110 at 122.385 kb on + strand, within ECD_00110 at 122.503 kb on - strand, within ECD_00110 at 122.669 kb on + strand, within ECD_00110 at 122.705 kb on + strand, within ECD_00110 at 122.705 kb on + strand, within ECD_00110 at 122.706 kb on - strand, within ECD_00110 at 122.706 kb on - strand, within ECD_00110 at 122.707 kb on + strand, within ECD_00110 at 122.707 kb on + strand, within ECD_00110 at 122.707 kb on + strand, within ECD_00110 at 122.707 kb on + strand, within ECD_00110 at 122.708 kb on - strand, within ECD_00110 at 122.708 kb on - strand, within ECD_00110 at 122.782 kb on + strand, within ECD_00110 at 122.945 kb on + strand at 122.962 kb on - strand at 122.976 kb on - strand at 123.034 kb on - strand at 123.037 kb on + strand at 123.037 kb on + strand at 123.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI remove 120,555 + +1.3 120,556 - -0.3 120,599 - +2.7 120,619 + -2.2 120,804 - ECD_00108 0.28 -2.0 120,880 + ECD_00108 0.36 -0.5 120,881 - ECD_00108 0.36 +2.3 120,884 - ECD_00108 0.37 +2.4 121,038 + ECD_00108 0.54 +1.2 121,038 + ECD_00108 0.54 -0.1 121,216 + ECD_00108 0.74 -0.9 121,217 - ECD_00108 0.74 -1.1 121,346 + ECD_00108 0.88 -1.4 121,434 + -0.2 121,453 + -0.3 121,496 - +2.4 121,509 + +0.7 121,513 - -0.9 121,522 + -1.5 121,522 + -0.7 121,522 + +1.0 121,522 + +1.6 121,522 + +1.5 121,523 - +2.0 121,524 + +4.0 121,524 + +0.5 121,524 + -1.9 121,524 + +1.3 121,524 + +2.0 121,524 + +1.2 121,524 + -2.8 121,525 - -0.5 121,642 + ECD_00109 0.19 -0.7 121,643 - ECD_00109 0.19 -2.4 121,643 - ECD_00109 0.19 +3.4 121,643 - ECD_00109 0.19 -2.6 121,645 + ECD_00109 0.19 +0.3 121,689 + ECD_00109 0.27 -0.3 121,703 - ECD_00109 0.30 -0.9 121,796 + ECD_00109 0.47 -1.3 121,797 - ECD_00109 0.47 +1.3 121,797 - ECD_00109 0.47 +0.2 121,797 - ECD_00109 0.47 +0.1 121,841 + ECD_00109 0.55 -3.3 121,967 + ECD_00109 0.78 +2.4 122,005 + ECD_00109 0.85 +1.8 122,006 - ECD_00109 0.85 -2.7 122,093 + -0.6 122,098 - -0.5 122,098 - -0.8 122,229 + ECD_00110 0.17 +0.2 122,230 - ECD_00110 0.17 -0.9 122,259 - ECD_00110 0.20 -1.5 122,276 + ECD_00110 0.22 +0.1 122,340 + ECD_00110 0.30 -3.5 122,341 - ECD_00110 0.30 -1.0 122,365 + ECD_00110 0.33 -0.9 122,365 + ECD_00110 0.33 -1.5 122,365 + ECD_00110 0.33 +0.8 122,366 - ECD_00110 0.33 +0.9 122,366 - ECD_00110 0.33 -1.0 122,366 - ECD_00110 0.33 -1.5 122,366 - ECD_00110 0.33 -2.7 122,385 + ECD_00110 0.35 +0.3 122,385 + ECD_00110 0.35 -1.4 122,503 - ECD_00110 0.49 +0.7 122,669 + ECD_00110 0.68 -1.2 122,705 + ECD_00110 0.72 -0.7 122,705 + ECD_00110 0.72 +1.5 122,706 - ECD_00110 0.73 +1.5 122,706 - ECD_00110 0.73 +2.4 122,707 + ECD_00110 0.73 -1.0 122,707 + ECD_00110 0.73 -1.0 122,707 + ECD_00110 0.73 +0.4 122,707 + ECD_00110 0.73 -0.8 122,708 - ECD_00110 0.73 -1.2 122,708 - ECD_00110 0.73 -1.4 122,782 + ECD_00110 0.81 +1.8 122,945 + -0.8 122,962 - +1.1 122,976 - -1.1 123,034 - +0.0 123,037 + -1.2 123,037 + -1.7 123,066 - +1.1
Or see this region's nucleotide sequence