Strain Fitness in Escherichia coli BL21 around ECD_00013

Experiment: P2_phage_0.5625_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00010 and ECD_00011 are separated by 148 nucleotidesECD_00011 and ECD_00012 overlap by 527 nucleotidesECD_00012 and ECD_00013 are separated by 66 nucleotidesECD_00013 and ECD_00014 are separated by 376 nucleotides ECD_00010: ECD_00010 - succinate-acetate transporter, at 9,926 to 10,492 _00010 ECD_00011: ECD_00011 - UPF0174 family protein, at 10,641 to 11,354 _00011 ECD_00012: ECD_00012 - hypothetical protein, at 10,828 to 11,313 _00012 ECD_00013: ECD_00013 - UPF0412 family protein, at 11,380 to 11,784 _00013 ECD_00014: ECD_00014 - chaperone Hsp70, with co-chaperone DnaJ, at 12,161 to 14,077 _00014 Position (kb) 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 10.381 kb on + strand, within ECD_00010at 10.382 kb on - strand, within ECD_00010at 10.480 kb on + strandat 10.481 kb on - strandat 10.481 kb on - strandat 10.481 kb on - strandat 10.481 kb on - strandat 10.548 kb on + strandat 10.549 kb on - strandat 10.634 kb on + strandat 10.743 kb on + strand, within ECD_00011at 10.743 kb on + strand, within ECD_00011at 10.743 kb on + strand, within ECD_00011at 10.743 kb on + strand, within ECD_00011at 10.744 kb on - strand, within ECD_00011at 10.955 kb on + strandat 10.956 kb on - strandat 10.956 kb on - strandat 10.956 kb on - strandat 10.956 kb on - strandat 11.127 kb on - strandat 11.224 kb on - strandat 11.304 kb on - strandat 11.342 kb on - strandat 11.369 kb on - strandat 11.369 kb on - strandat 11.431 kb on - strand, within ECD_00013at 11.532 kb on + strand, within ECD_00013at 11.533 kb on - strand, within ECD_00013at 11.587 kb on + strand, within ECD_00013at 11.593 kb on + strand, within ECD_00013at 11.620 kb on + strand, within ECD_00013at 11.620 kb on + strand, within ECD_00013at 11.707 kb on - strand, within ECD_00013at 11.707 kb on - strand, within ECD_00013at 11.707 kb on - strand, within ECD_00013at 11.880 kb on + strandat 12.038 kb on + strandat 12.038 kb on + strandat 12.039 kb on - strandat 12.039 kb on - strandat 12.042 kb on - strandat 12.109 kb on + strandat 12.112 kb on + strandat 12.112 kb on + strandat 12.112 kb on + strandat 12.143 kb on + strandat 12.143 kb on + strandat 12.143 kb on + strandat 12.143 kb on + strandat 12.145 kb on + strandat 12.145 kb on + strandat 12.145 kb on + strandat 12.145 kb on + strandat 12.145 kb on + strandat 12.405 kb on + strand, within ECD_00014at 12.598 kb on + strand, within ECD_00014at 12.724 kb on + strand, within ECD_00014

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P2_phage_0.5625_MOI
remove
10,381 + ECD_00010 0.80 -0.8
10,382 - ECD_00010 0.80 +0.7
10,480 + -2.0
10,481 - -1.4
10,481 - +2.1
10,481 - -2.1
10,481 - +0.0
10,548 + -2.0
10,549 - -0.2
10,634 + -1.6
10,743 + ECD_00011 0.14 -1.9
10,743 + ECD_00011 0.14 +1.6
10,743 + ECD_00011 0.14 -2.7
10,743 + ECD_00011 0.14 -0.2
10,744 - ECD_00011 0.14 -0.1
10,955 + -0.8
10,956 - +1.5
10,956 - +2.5
10,956 - -2.8
10,956 - +1.0
11,127 - +1.1
11,224 - +0.4
11,304 - -1.2
11,342 - +2.4
11,369 - -3.2
11,369 - +0.8
11,431 - ECD_00013 0.13 -0.8
11,532 + ECD_00013 0.38 +1.6
11,533 - ECD_00013 0.38 +3.2
11,587 + ECD_00013 0.51 -2.3
11,593 + ECD_00013 0.53 +0.5
11,620 + ECD_00013 0.59 +1.3
11,620 + ECD_00013 0.59 +0.2
11,707 - ECD_00013 0.81 +0.3
11,707 - ECD_00013 0.81 +0.7
11,707 - ECD_00013 0.81 +2.5
11,880 + +0.7
12,038 + +2.5
12,038 + +2.1
12,039 - +3.1
12,039 - +0.9
12,042 - +1.5
12,109 + +2.1
12,112 + +2.4
12,112 + +2.6
12,112 + +2.6
12,143 + -2.0
12,143 + -1.8
12,143 + -0.7
12,143 + -1.2
12,145 + -1.9
12,145 + -1.3
12,145 + -2.1
12,145 + +0.0
12,145 + +0.5
12,405 + ECD_00014 0.13 -1.5
12,598 + ECD_00014 0.23 -0.2
12,724 + ECD_00014 0.29 -0.2

Or see this region's nucleotide sequence