Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21385

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21380 and CA264_21385 are separated by 125 nucleotidesCA264_21385 and CA264_21390 are separated by 1 nucleotidesCA264_21390 and CA264_21395 are separated by 88 nucleotides CA264_21380: CA264_21380 - hypothetical protein, at 139,655 to 140,869 _21380 CA264_21385: CA264_21385 - hypothetical protein, at 140,995 to 141,591 _21385 CA264_21390: CA264_21390 - hypothetical protein, at 141,593 to 142,033 _21390 CA264_21395: CA264_21395 - hypothetical protein, at 142,122 to 142,967 _21395 Position (kb) 140 141 142Strain fitness (log2 ratio) -2 -1 0 1 2 3at 140.062 kb on + strand, within CA264_21380at 140.210 kb on + strand, within CA264_21380at 140.314 kb on + strand, within CA264_21380at 140.314 kb on + strand, within CA264_21380at 140.418 kb on + strand, within CA264_21380at 140.967 kb on + strandat 140.988 kb on + strandat 140.991 kb on + strandat 140.991 kb on + strandat 140.996 kb on + strandat 140.996 kb on + strandat 141.013 kb on + strandat 141.013 kb on + strandat 141.036 kb on + strandat 141.266 kb on - strand, within CA264_21385at 141.266 kb on - strand, within CA264_21385at 141.266 kb on - strand, within CA264_21385at 141.280 kb on - strand, within CA264_21385at 141.385 kb on - strand, within CA264_21385at 141.406 kb on + strand, within CA264_21385at 141.486 kb on - strand, within CA264_21385at 142.189 kb on + strandat 142.190 kb on - strandat 142.209 kb on + strand, within CA264_21395at 142.250 kb on - strand, within CA264_21395at 142.253 kb on + strand, within CA264_21395at 142.253 kb on + strand, within CA264_21395at 142.254 kb on - strand, within CA264_21395at 142.277 kb on - strand, within CA264_21395at 142.322 kb on + strand, within CA264_21395at 142.381 kb on - strand, within CA264_21395at 142.391 kb on + strand, within CA264_21395

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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140,062 + CA264_21380 0.33 -2.0
140,210 + CA264_21380 0.46 +0.1
140,314 + CA264_21380 0.54 -0.6
140,314 + CA264_21380 0.54 +1.1
140,418 + CA264_21380 0.63 -1.2
140,967 + +0.3
140,988 + +0.4
140,991 + +0.3
140,991 + -0.2
140,996 + +0.1
140,996 + +0.1
141,013 + -0.9
141,013 + +0.4
141,036 + +3.4
141,266 - CA264_21385 0.45 -0.0
141,266 - CA264_21385 0.45 -0.1
141,266 - CA264_21385 0.45 -0.4
141,280 - CA264_21385 0.48 +0.1
141,385 - CA264_21385 0.65 +0.3
141,406 + CA264_21385 0.69 -0.9
141,486 - CA264_21385 0.82 -0.0
142,189 + -1.5
142,190 - +0.7
142,209 + CA264_21395 0.10 +0.8
142,250 - CA264_21395 0.15 +1.1
142,253 + CA264_21395 0.15 -2.5
142,253 + CA264_21395 0.15 +0.1
142,254 - CA264_21395 0.16 -1.4
142,277 - CA264_21395 0.18 -0.5
142,322 + CA264_21395 0.24 +0.8
142,381 - CA264_21395 0.31 -0.5
142,391 + CA264_21395 0.32 -1.3

Or see this region's nucleotide sequence