Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21330

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21325 and CA264_21330 are separated by 26 nucleotidesCA264_21330 and CA264_21335 are separated by 79 nucleotidesCA264_21335 and CA264_21340 are separated by 79 nucleotides CA264_21325: CA264_21325 - copper-translocating P-type ATPase, at 127,786 to 130,023 _21325 CA264_21330: CA264_21330 - MBL fold metallo-hydrolase, at 130,050 to 131,405 _21330 CA264_21335: CA264_21335 - hypothetical protein, at 131,485 to 131,742 _21335 CA264_21340: CA264_21340 - hypothetical protein, at 131,822 to 132,412 _21340 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1 2at 129.069 kb on + strand, within CA264_21325at 129.172 kb on + strand, within CA264_21325at 129.172 kb on + strand, within CA264_21325at 129.173 kb on - strand, within CA264_21325at 129.218 kb on + strand, within CA264_21325at 129.252 kb on + strand, within CA264_21325at 129.301 kb on + strand, within CA264_21325at 129.356 kb on + strand, within CA264_21325at 129.396 kb on - strand, within CA264_21325at 129.417 kb on + strand, within CA264_21325at 129.418 kb on - strand, within CA264_21325at 129.426 kb on - strand, within CA264_21325at 129.445 kb on - strand, within CA264_21325at 129.445 kb on - strand, within CA264_21325at 129.445 kb on - strand, within CA264_21325at 129.468 kb on + strand, within CA264_21325at 129.469 kb on - strand, within CA264_21325at 129.531 kb on + strand, within CA264_21325at 129.531 kb on + strand, within CA264_21325at 129.532 kb on - strand, within CA264_21325at 129.532 kb on - strand, within CA264_21325at 129.532 kb on - strand, within CA264_21325at 129.719 kb on + strand, within CA264_21325at 129.720 kb on - strand, within CA264_21325at 129.777 kb on + strand, within CA264_21325at 129.778 kb on - strand, within CA264_21325at 129.781 kb on - strand, within CA264_21325at 129.798 kb on + strand, within CA264_21325at 129.804 kb on - strandat 129.804 kb on - strandat 129.804 kb on - strandat 129.868 kb on - strandat 129.872 kb on - strandat 129.905 kb on + strandat 130.021 kb on + strandat 130.022 kb on - strandat 130.053 kb on + strandat 130.053 kb on + strandat 130.054 kb on - strandat 130.054 kb on - strandat 130.054 kb on - strandat 130.055 kb on + strandat 130.055 kb on + strandat 130.057 kb on + strandat 130.057 kb on + strandat 130.058 kb on - strandat 130.068 kb on + strandat 130.095 kb on + strandat 130.096 kb on - strandat 130.105 kb on + strandat 130.156 kb on - strandat 130.253 kb on + strand, within CA264_21330at 130.254 kb on - strand, within CA264_21330at 130.256 kb on - strand, within CA264_21330at 130.272 kb on + strand, within CA264_21330at 130.272 kb on + strand, within CA264_21330at 130.334 kb on + strand, within CA264_21330at 130.334 kb on + strand, within CA264_21330at 130.335 kb on - strand, within CA264_21330at 130.335 kb on - strand, within CA264_21330at 130.409 kb on - strand, within CA264_21330at 130.409 kb on - strand, within CA264_21330at 130.409 kb on - strand, within CA264_21330at 130.449 kb on - strand, within CA264_21330at 130.453 kb on + strand, within CA264_21330at 130.454 kb on - strand, within CA264_21330at 130.469 kb on - strand, within CA264_21330at 130.540 kb on - strand, within CA264_21330at 130.548 kb on - strand, within CA264_21330at 130.583 kb on - strand, within CA264_21330at 130.654 kb on + strand, within CA264_21330at 130.678 kb on - strand, within CA264_21330at 130.717 kb on + strand, within CA264_21330at 130.718 kb on - strand, within CA264_21330at 130.737 kb on + strand, within CA264_21330at 130.737 kb on + strand, within CA264_21330at 130.737 kb on + strand, within CA264_21330at 130.737 kb on + strand, within CA264_21330at 130.741 kb on + strand, within CA264_21330at 130.749 kb on + strand, within CA264_21330at 130.750 kb on - strand, within CA264_21330at 130.833 kb on + strand, within CA264_21330at 130.833 kb on + strand, within CA264_21330at 130.834 kb on - strand, within CA264_21330at 130.834 kb on - strand, within CA264_21330at 130.834 kb on - strand, within CA264_21330at 130.964 kb on - strand, within CA264_21330at 130.964 kb on - strand, within CA264_21330at 130.984 kb on - strand, within CA264_21330at 131.346 kb on + strandat 131.353 kb on + strandat 131.354 kb on - strandat 131.415 kb on + strandat 131.420 kb on + strandat 131.427 kb on + strandat 131.430 kb on + strandat 131.431 kb on - strandat 131.431 kb on - strandat 131.432 kb on + strandat 131.433 kb on - strandat 131.433 kb on - strandat 131.490 kb on - strandat 131.588 kb on + strand, within CA264_21335at 131.589 kb on - strand, within CA264_21335at 131.620 kb on + strand, within CA264_21335at 131.773 kb on + strandat 131.815 kb on + strandat 131.884 kb on + strand, within CA264_21340at 131.889 kb on + strand, within CA264_21340at 131.889 kb on + strand, within CA264_21340at 131.891 kb on + strand, within CA264_21340at 131.892 kb on - strand, within CA264_21340at 131.897 kb on - strand, within CA264_21340at 131.903 kb on - strand, within CA264_21340at 131.903 kb on - strand, within CA264_21340at 131.908 kb on - strand, within CA264_21340at 131.914 kb on + strand, within CA264_21340at 131.914 kb on + strand, within CA264_21340at 131.915 kb on - strand, within CA264_21340at 131.915 kb on - strand, within CA264_21340at 132.047 kb on - strand, within CA264_21340at 132.047 kb on - strand, within CA264_21340at 132.118 kb on + strand, within CA264_21340at 132.131 kb on + strand, within CA264_21340at 132.132 kb on - strand, within CA264_21340at 132.132 kb on - strand, within CA264_21340at 132.206 kb on - strand, within CA264_21340at 132.298 kb on + strand, within CA264_21340

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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129,069 + CA264_21325 0.57 -0.7
129,172 + CA264_21325 0.62 +0.8
129,172 + CA264_21325 0.62 +0.6
129,173 - CA264_21325 0.62 +1.7
129,218 + CA264_21325 0.64 +0.7
129,252 + CA264_21325 0.66 -1.4
129,301 + CA264_21325 0.68 -0.2
129,356 + CA264_21325 0.70 +0.3
129,396 - CA264_21325 0.72 -0.2
129,417 + CA264_21325 0.73 -0.5
129,418 - CA264_21325 0.73 -0.5
129,426 - CA264_21325 0.73 +1.1
129,445 - CA264_21325 0.74 +2.1
129,445 - CA264_21325 0.74 -0.3
129,445 - CA264_21325 0.74 -0.4
129,468 + CA264_21325 0.75 +1.1
129,469 - CA264_21325 0.75 -0.5
129,531 + CA264_21325 0.78 +0.6
129,531 + CA264_21325 0.78 -0.4
129,532 - CA264_21325 0.78 -0.8
129,532 - CA264_21325 0.78 -1.6
129,532 - CA264_21325 0.78 -0.4
129,719 + CA264_21325 0.86 -1.5
129,720 - CA264_21325 0.86 -0.1
129,777 + CA264_21325 0.89 -2.0
129,778 - CA264_21325 0.89 +0.1
129,781 - CA264_21325 0.89 +0.7
129,798 + CA264_21325 0.90 -0.6
129,804 - +0.7
129,804 - +0.1
129,804 - -2.0
129,868 - -0.2
129,872 - +0.6
129,905 + -0.5
130,021 + +0.7
130,022 - -0.7
130,053 + -1.2
130,053 + +1.1
130,054 - -0.1
130,054 - +0.3
130,054 - -0.2
130,055 + +0.6
130,055 + -0.3
130,057 + -0.0
130,057 + -0.2
130,058 - -0.6
130,068 + +0.9
130,095 + -1.5
130,096 - -0.9
130,105 + -0.7
130,156 - -0.5
130,253 + CA264_21330 0.15 -0.0
130,254 - CA264_21330 0.15 -0.7
130,256 - CA264_21330 0.15 -0.5
130,272 + CA264_21330 0.16 -2.2
130,272 + CA264_21330 0.16 -0.9
130,334 + CA264_21330 0.21 +0.1
130,334 + CA264_21330 0.21 -1.0
130,335 - CA264_21330 0.21 +0.8
130,335 - CA264_21330 0.21 +1.7
130,409 - CA264_21330 0.26 -1.2
130,409 - CA264_21330 0.26 +0.0
130,409 - CA264_21330 0.26 +0.1
130,449 - CA264_21330 0.29 +0.5
130,453 + CA264_21330 0.30 -0.5
130,454 - CA264_21330 0.30 -2.0
130,469 - CA264_21330 0.31 +0.1
130,540 - CA264_21330 0.36 +1.1
130,548 - CA264_21330 0.37 -1.5
130,583 - CA264_21330 0.39 -0.9
130,654 + CA264_21330 0.45 -1.1
130,678 - CA264_21330 0.46 -0.9
130,717 + CA264_21330 0.49 -0.2
130,718 - CA264_21330 0.49 -0.7
130,737 + CA264_21330 0.51 -0.2
130,737 + CA264_21330 0.51 -0.2
130,737 + CA264_21330 0.51 -0.5
130,737 + CA264_21330 0.51 +1.7
130,741 + CA264_21330 0.51 +1.1
130,749 + CA264_21330 0.52 +0.4
130,750 - CA264_21330 0.52 -1.5
130,833 + CA264_21330 0.58 +0.8
130,833 + CA264_21330 0.58 -1.2
130,834 - CA264_21330 0.58 -0.4
130,834 - CA264_21330 0.58 +1.1
130,834 - CA264_21330 0.58 -0.5
130,964 - CA264_21330 0.67 -0.6
130,964 - CA264_21330 0.67 -0.9
130,984 - CA264_21330 0.69 -1.6
131,346 + -0.8
131,353 + -1.4
131,354 - +0.4
131,415 + -0.5
131,420 + +0.1
131,427 + -1.0
131,430 + +0.1
131,431 - -0.4
131,431 - +0.3
131,432 + -0.3
131,433 - -0.4
131,433 - -1.5
131,490 - +0.5
131,588 + CA264_21335 0.40 +0.1
131,589 - CA264_21335 0.40 -1.3
131,620 + CA264_21335 0.52 +0.6
131,773 + -0.8
131,815 + -0.3
131,884 + CA264_21340 0.10 -0.5
131,889 + CA264_21340 0.11 +0.3
131,889 + CA264_21340 0.11 -0.7
131,891 + CA264_21340 0.12 -0.9
131,892 - CA264_21340 0.12 -0.0
131,897 - CA264_21340 0.13 -0.5
131,903 - CA264_21340 0.14 +0.7
131,903 - CA264_21340 0.14 -1.2
131,908 - CA264_21340 0.15 +0.4
131,914 + CA264_21340 0.16 -1.4
131,914 + CA264_21340 0.16 -0.4
131,915 - CA264_21340 0.16 +0.1
131,915 - CA264_21340 0.16 +0.7
132,047 - CA264_21340 0.38 -0.1
132,047 - CA264_21340 0.38 -0.4
132,118 + CA264_21340 0.50 +0.5
132,131 + CA264_21340 0.52 -0.1
132,132 - CA264_21340 0.52 -0.7
132,132 - CA264_21340 0.52 +0.1
132,206 - CA264_21340 0.65 -0.9
132,298 + CA264_21340 0.81 -1.5

Or see this region's nucleotide sequence